RNA id: XM_026921147.2


Basic Information

Item Value
RNA id XM_026921147.2
length 2452
RNA type mRNA
GC content 0.44
exon number 12
gene id rbpjl
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6578612 ~ 6602109 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGTGCAGAGTTGTGTACAGTGGAGTATAAAGCAGGGCAAAGGAGCACTAGAAGATACAGGAAGAAAACTGCAACTGAGAGACATGCAAGAACAAAATGAAGCTCAGGGAGAAGCTGGCCTGCAGAATGAGGATCCTGTGGTCTCGTCACTCGTGTACAGAGCTGAAGCATCAGCACTCACTCACCTTGGCGAAGTGCAGGGAAGAAATGAGACGCAGCCGGCGAGATGGGACAgGGTGGATCAAAGTTTTGCTTTAATGCCAAGAATAAGCAGAGACTCTGTGACACAGTATCTTCAGTACAGACCTGACCAATCAGTGCTCATTCTCCATGCCAGAGTCGCTCAGAAGTCCTATGGAAATGAGAAACGATTCTTCTGTCCTCCTCCTTGTGTGTACCTCTGTGGAGCTGGATGGAATCTCAAAGCATCAGGTCTCGGTGAGTCTAGTTGTCGTGTGTGGGGGTATATGGGTCTGGATGGCTCCCCTGGGACACAAGCAGACAACTTCAAGCTGAGCTTTgaagaacaaacagaaagaaggaTGTTTGCCTGTGCCAAAACCCTGTATATCTCAGATACAGATAAGCGGAAACACTTCCGTTTGCTGCTTCGTCTGTTCCACAGTGGAGGGCAGGAGATCGGTTCTTTCCAAAGTGGACTTATTAAAGTCATCTCCAAACCGTCACAGAAAAGACAATCCATGAAGAACGCAGATTtgtgcatCTCATCTGGTTCAAGAGTGTCATTGTTTAATCGCCTGAGGTCTCAGACAGTCAGTACGCGTTACCTTGCAGTGGAGGGTGGAGCTTTTGTGGCTAGTGCCAGACAATGGACTGCTTTTACTGTCATTCTAGtgGAGGATCAGCAGACTGACCGCAGTGATTACTCTGTATGTGAGAGTTATATCTGTTATGGCTGTGTGGTTCAGCTGGTATGCACCATTTCAGGAGTTGCACTGCCACCCATGGTGATTCGTAAGGTGAATAAGCAGCACGCATGCCTGGATATAGATGAGCCAGTGTCCCAGCTTCATAAATGTGCATTTCAGCTCAGAAACAGCAAGCACATGTACCTCTGCCTCTCCAATGAAAAAATCTTACAGTACCAGGCTTCTCCATGTCCAAAGGAGAGCAGTCGAGAGCTGTTGAATGATGGCTCATGTTGGACCATCACTGGTACAGAGGTTGTTGAGTACACCTTCAGTGAGAGCCTGACCACTAGCCCAGCTGTCATCAGCCCCATCCCTGTCATTAATGGACTGGAGCTAAATGGAGGAGGCCATGTGGCCATGTTAGAGCTCCATGGAGAAAACTTCAGTCCTTACCTAAAGGTCTGGTTTGGAAACATGGAGGCTGAAACTATGTTCAGGAGTCCGAGGTctttgctgtgtgttgtgcCTGATATTTCAGTGTTCGGTGGAGAGTGGCGGTGGTTCAGGCAGCCCATCACAGTCCCTTTGTCTTTGATACGATTGGATGGGATGATCTACAGAAGCTCATTCACGTTTACATACACACCCGAGCACAGTGCTTCCTTTCAGCCATGTGCTACTGCTGATAGAACTGCCAACTCAGACACCCTCATTGACACCATACACCAGGAGTTCACAAGAACCAATTTTCACTTGTTCATGCAGAGCTGACAGAGACTGAGggtaaaacacaaaaaaaacctaatcCTAATTTCACAAActcatgtaaaatattttggttttgtccattccaaaaataaaatacacagtttTGTGCCAATGAGCTGGACATGTGTGGGAAcatcaaaaaaaagaaacaccaaTAACACACCATTCTCAGGAACTATTAAGCTGCAAAAAACGACATCTTAGGAAATAccttaaatatagtcaaatttagcTAGTAATTCCCACTACAGGATTACAATAAAGCAATATATAAGCTTTTTCATGTCAATGCTGGAATCAATGACAAACTCcaattcccacaatgcacctctgACTACAAACATGGACACCTTGTACTACAACACCCACACACCGCGTTCAACGTCACGTTCGcagtcacctgattactgattgcacacacctggactcaatcaccactacacactacataagCATGCATCTCTGTGTTTACACCTGATGTACCAAGACATTTGGTCATTGTTGTGGATTCTGTCTTTGACCCGCTTGTTTGTGATCCTTGCCTTGCTCTTGGATAATCTGTTTGCAAATCGCCTGATCTCTTGCCTGCCTTTTGACCTTGATCTCTGCTTCataatttggatttgtttgttgttgccagttcttttaattaaaagcaaCGTTTGCTGCAACTTCTGCCATCCTTGCTACCTGACAATATTATTAATCCTGTTTCAATTTTTACTCATTTCCAGCTtaaaatagtcttgttctactGGCACaagattttgttcatttgtagcatttatttctagaaaaaagctaaattatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26832 lncRNA downstream 277565 6298122 ~ 6301047 (-) True G22538
TU26833 lncRNA downstream 294664 6283115 ~ 6283948 (-) True G22539
TU26768 lncRNA downstream 348643 6229760 ~ 6229969 (-) True G22478
TU26749 lncRNA downstream 369958 6205284 ~ 6208654 (-) True LOC113546630
TU26760 lncRNA downstream 429445 6148946 ~ 6149167 (-) True G22470
TU26972 lncRNA upstream 19826 6621935 ~ 6622442 (-) True G22650
TU27022 lncRNA upstream 73371 6675480 ~ 6675687 (-) True G22695
TU27026 lncRNA upstream 81345 6683454 ~ 6683730 (-) True G22699
TU27070 lncRNA upstream 116166 6718275 ~ 6765692 (-) True G22743
TU27226 lncRNA upstream 197409 6799518 ~ 6800819 (-) True G22896
XM_026928164.2 mRNA downstream 23428 6549355 ~ 6555184 (-) False oser1
XM_026928077.2 mRNA downstream 23442 6549355 ~ 6555170 (-) True oser1
XM_034310019.1 mRNA downstream 23510 6549355 ~ 6555102 (-) False oser1
XM_026920606.2 mRNA downstream 41239 6527609 ~ 6537373 (-) True sdc4
XM_034311409.1 mRNA downstream 62189 6503521 ~ 6516423 (-) True gdf5
XM_026922899.2 mRNA upstream 142274 6744383 ~ 6770848 (-) True LOC113531909
XM_034309682.1 mRNA upstream 180164 6782273 ~ 6787592 (-) True rhebl1
XM_026918278.2 mRNA upstream 198816 6800925 ~ 6959160 (-) True cntn4
XM_026918266.2 mRNA upstream 464209 7066318 ~ 7193141 (-) True LOC113529215
XM_026914958.2 mRNA upstream 679898 7282007 ~ 7370519 (-) False chl1b
TU26888 other downstream 98601 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 501735 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 1042552 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 1042605 5534124 ~ 5536007 (-) False romo1
XR_003403148.2 other downstream 1377400 5111463 ~ 5201212 (-) False LOC113530384
XR_004580309.1 other upstream 1660510 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 1878942 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 1878942 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 1878942 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 2833454 9435563 ~ 9441810 (-) False tusc2a

Expression Profile