RNA id: TCONS_00007972


Basic Information

Item Value
RNA id TCONS_00007972
length 5244
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_004171
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27705030 ~ 27739049 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taattttaacatttaaccgatttttattattagttctgatttttaaaaaaacgcAGCCtggttaaaaaatgaataaatattaatgtttCCGACCTTTAGACGGGTAGTGGCCAGCCATTACGAGAGGTTTTATAATATCGTGAGAGTGTATCATGGAGTATGGATCATAAGCATGACATGCAACAGTTCTCCAAAGTGAACCGCGCCCACCGAACTCCAGACTCCTCCTCCGTTGTGACTGTACGTGCCCTGCGCCGCCGCTCTTCTCTCCGTACCTCTCTTTCCCCTACACACCAGACACATCCAGACCGCAGACATGGCTCCGTAAAGGTGCACATGGCGGCCAGCAGCCATGAACCAAAAAACAACTCACCAAAAACTACAGATGCATCTCCGATTTGATTAATTTTGGACCGACCAACTTCTACATCCGCTGCAATATTCTCCAGTCCGGTTTTCAGCATTCGGGAGAGGAGGCTGCTCGCTTGCAACTCTGTCTCCATTTTCTCCAGACAATTTTACGTTTatcccgaaataaaacaaaacaaaaaacaaaagtcatGGGTGTGCAGGGTTTCCAGGAATACATTGAGAAGCATTGCCCCAACGCCGTGGTGCCGGTGGAGCTCCAGAAGCTCGCCCGGGGGAGTCTGGTCGGCGGCGGCCGGCAGAGACCTCCTCAAACGCCGCTCCGGCTGCTGGTGGACGCCGAGAACTGTCTTCACCGGCTTTACGGCGGCTTTTACACCGACTGGGTGAGCGGAGGCCAGTGGAACCATATGCTCGGGTACCTCGCCGCCCTTGCCAAAGCCTGTTTCAACGGCAACATCGAGCTGCTAGTGTGCTTCAATGGCGCCCTGGAGAAAGGCCGTCTCCACGAGTGGGTCAAGCGACAGGTGAACGAGAGGCAGACCGCCCAGCAGATTGTCAGTCACGTCCAGAACAAGGGAACACCGCCGCCCAAGGTCTGGTTTCTGCCCCCGGTGTGCATGGCCCACTGCATCCGCCTGGCGCTCCTCAGGTTCCACATCGGGGTTGTCCAGACCATCGAGGATCATCACCAGGAAGTGATTGCCTTATTTCGAGAGAACGGCTTCCATGGTCTGGTTGCCTATGATTCGGATTACGCCCTGTGCAACATCCCATATTACTTCAGTGCCCATGCCCTCAAACTCAGCCGCAACGGCAAAAGCCTCACCACCAGCCAATACCTGATGCACGAAGTTGCCAAGCAGCTTAATCTCAATCCAAATCGTTTCGTCATTTTTGCTTCACTTTTAGGTAATCACATACTGCCTGATGAAGACTTGGCTGCCTTTCACTGGAGTTTACTTGGTCCTGAGCATCCTTTAGCATCCTTGAAGGTTCGTGCCCATCAGCTCGTTCTTCCTCCATGTGACGTCGTCATTAGAGCTGTGGCAGATTATGTCCGAAACCTGCAAGATGTCCACGATCTGGAAGCTATTGCTAAAGACATATTCAAGCATTCGCAGTCCAGAACCGATGACAAAGTTTTCCGTTTAAAGAAAGCAGTGGATTATTACAGCACCGCCAGCAAGCCTCCTCACTTCCCCCCCTATTTAGTCAGACCAAATCAAATGGGAATGCCAGCAGCAACGCAGATGCTTAACATTCCAGGCAAACCTGGGGTCCAGCATGGCTTATCCGGCCCTCCACTGGCAGGGTCTGTCCATGAGGCGGAGCAGTCTAGTAAAGGGCTCTTAGAACAGAACAGCTACAGCAACATTCCTAATGACAGAAAGCAGCACACTCCGCTCTACGAAAGACTGTCCCCCATCAACCCCAATCACAGTGGCACCTCTAACCACACAGACCCAGCCTTCTGCACCACCTCGTCCACATCCTCAGAGAATGAGGAAAACACAGGCTCCACTGCCAACCATGTAAGTGACCATAAGCGATGGGACAAACAGAAGAACCAGATGGACAACATCCCAGAAGGAGACCATGTGGACCAAAATGATTCTGATCCTTCTGCGACCTCTCCTGTGAACCAAGGCCTGGAGGGCAAAGGTCATGTCGGGGTCAACGTCCAGATTCCATCCCTGCTTTCAATGCCAACAAGAAACCACATGGACATCACCACTCCTCCTTTACCAGTGGTGGCGCCAGAGGTGCTGCGGGTCGCTGAGCACAGACACAAAAAGGGCCTCATGTACCCATACATCTACCACGTTCTTACCAAGggTGAGATTAAATTATCGGTCACCATTGAGGATGAAGCTAATAAAGACCTGCCCTCTGCGGTACAGCTTTACCGGCCTATTCGTCAGTATGTTTACGGGGTGCTCTTCAGCCTGGCCGAGGCCAAAAAGAGGGCCGAGAGACTGGCCATGAGGAGAAATTGTCTCCCTGAATATCCAGCGGTAATCATAAAAGAATGGGCTGCTTACAAAGGCAAATCACCACACACCCCTGAACTGGTGGAAGCTCTACCTTTCCGAGAGTGGACCTGCCCAAACCTGAAGAAACTCTGGCTGGGCAAAGCAGTGGAGGACAAGAACCGCAGGATGAGGGCTTTTCTGGCCTGCATGAGGTCTGACACTCCAGCAATGCTGAACCCTGCCAACGTCCCCACACCTCTCATGGTGCTGTGCTGCGTTCTGCGGTTTATGTTACAATGGCCAGGAGTAAGAATTTTGCGTCGTAACGAACTTGACGCTTTCCTAGCTCAAGCACTTTCTCCTAAACTTTATGAGCCTGACCAGCTGCAGGACCTGAAGATTGATAACCTGGATCCACGTGGCGTTCAGCTGGCTGCTCTTTTTATGAGCGGCGTGGATATGGCGCTGTTTGCCAATGATGTGTGCGGGCAGCCTATTCCATGGGAACACTGCTGTCCGTGGATGTATTTTGATGGAAAGCTGCTACAAAGTAAACTCAACCGGGCCAACAGGGACAAGGCCCCGCTTATTGACCTCTGCGATGGCCAGACTGAACTAGTTGCCAAGGTGGAGAAGATGCGTCAGAGTATTCTGGAGGGTCTGAACTTCTCTCGCCCACCACAGCCCCTTGCCTTCCCTCCGCCACCTCCACATGCAATGCCTTTCTATCCGTCAAACAGCACCTTCTACCCTCCGCCGCCTCTGCCCCCGATGCAGGGGAGAGGCAGAGGCATGCCTGTAGGACTTCAGGCCATTCCATCACAGGGTGGTAAGCTTGAGATTGCAGGCACAGTGGTGGGTCAGTGGGCTGGTAGTCGTCGTGGCAGAGGAAGAGCCCCATTTCCCATACAAGTGGTGTCAGTTGGTGGACCAACCAGAGGTCGTCCAAGAGGTGTGATTTCTACTCCTGTCATAAGGACCTTTGGACGAGGAACCAGATACCTTAGTAGAGGGTTCAAGAGTCAGGGATCATTCCAGagcaagcctGCATATGCTGCCTCAACCTATGAAGTGATAAAAGACCGAAAGAAGCCCAAGTTGGCGACCGACGCACCACATCTGCCCTCAGATCACTCCACAGTGGCAGAAAACGGCTTGGCGGAGGGCAAAGATGCAGACCAGCTCATAGGGAACCAAGGGGAAAGCAGGGCTCCAAACCAACCTGAAAGTGCCTTTAGCAACGAATCTAAAATGTGCAATACTAATCCTCATTTAAATGCACTAAATGAAGATGGCGAGGGCCACAGAGATGAAGCTCTGAGCGTCGCCGTCTTAAAAGCAGAAGAGTAAACCTATTTTTATAGAGAGGGTGATAGATGGTGAAGCGTTAAGGAATATTTGGAAGGATGGAAGGCCTACAGTTGGTGCACATTTTTTCCTCTCCAAAGTGAAAAACGAGGACTTGGGAATCTTTGAAATCCCTCTTCAATGTCAACGAGTTTAAACCACAAGCAATGATGAGAAAACCTCTCGGTAAAACATAGATATACAAGTCAAAAAAATGGAGATTCATAGCAGTTTCATGATGATGATAGACTGTGTTCTCCCTGGTCGACGTTTCAGAACTGGTTACatgaaattattttactttcacgATGAAATAGAGAAACTGAAATAACTGATTTTCCTTTGCCAGTCTTTTAGTTTTAGTACGTTGAGATTCAagtaccatatatatatatatttgccatTGTAATTGAGTTTGTATCGTCACAGTAAATGCTTTTAATCTTATGGTTTGAAAACGTAAAGCTCACGATTTGAAAAAGAGAACACATTTCTCACGTGTCAGCGTTGTGAGTTTACTCCTGTTTCAAATGTGCGGTTGTTTTGACATTGAGTAACTAGTGTTAATACTACTGCATCTTGCGTTCTGATGATTTCGATGTCATACGATAGCGGTTAATGCGTCAAAGAAACGGTTTAAAACCTCACAAGCTCTTGAAAAGCACCGACGTCTCTTTTTTCCGTGTCAGAAAACGCCATGCATCAGTGATCAGCGATTACCGTGGTTTCTTGAATCAGCCGTAGCACATTAGTACAACTGTCTCAGCTAAACTTTCTGCATGGCTCACgattaaaagttttaaacaaacaaaatggtgTGTAGTTATGATGCATGTTGTCCTATTTCTTCATTACAAATACTGTGCCCATCtgcaaaattgaaaaaataaaggcTGATAATCAGTAATAGTCCTATAAAAGGTGTTAACTGTTAGTCAGTAACTGATTTGCTCTAACCTTAAGTTgattatttttgtgatttattgaCCTCTGTTGTATTTACTCCAACATTATCTAGCCACTTTAAATATTGTTAATCCTGCTGTACTCATCACTGTATACATTACTGTTCTCTGTTGCTGTTTTCCGCATTCATACTAGCAGATCATCTctgaaaaaacaaaatgtttgagAAAAAATGGCTTTGATCTTGATAAATTCTCCCCCTTTTCTTAGCTCGATACAAGTTTTTGCGAAACATTCGACCCTCCCATTTGAGAGTTTAGCCTAAGCAAGTACACTTGATGTTTACTTTAGTGTTATAAACGTACTTCTAAACGAGAATCATTACTTCTCCATCTAATCCTCCTGATGCTTTTCATTGCACATTAGTGATCAGAAATATGGTGTATTCCCCTCAGTCCCCAGCCGCAAGTCTAAGTAGGTTACCTTGATGTAAGTTGATCGGAGTTTCTTCCTAACTCATGGGTTGTTAAAGAATGAACTACTGTTGGGTTTGAGTGATTGTTGATGGGTTGTGGTGTGATGTATTTCGAAGGAAATTGAATGCAACTTACAATGCTTAATAAAAATCTTTATTCTTTTAGAATAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110131-10 Orthologous to human FAM120A (family with sequence similarity 120A).

Ensembl:

ensembl_id ENSDART00000021949

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008800 lncRNA downstream 79565 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00008801 lncRNA downstream 79575 27592643 ~ 27625455 (-) True XLOC_004169
TCONS_00007969 lncRNA downstream 79905 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007965 lncRNA downstream 197057 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA downstream 201898 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00007976 lncRNA upstream 44709 27783758 ~ 27806767 (-) True XLOC_004173
TCONS_00008474 lncRNA upstream 61810 27800859 ~ 27809715 (-) True XLOC_004174
TCONS_00007985 lncRNA upstream 90181 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00007993 lncRNA upstream 339594 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007994 lncRNA upstream 339594 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00007971 mRNA downstream 2195 27646675 ~ 27702835 (-) True XLOC_004170
TCONS_00007970 mRNA downstream 2252 27644524 ~ 27702778 (-) False XLOC_004170
TCONS_00007966 mRNA downstream 167369 27511277 ~ 27537661 (-) False XLOC_004168
TCONS_00007967 mRNA downstream 167380 27520321 ~ 27537650 (-) False XLOC_004168
TCONS_00007968 mRNA downstream 167437 27521513 ~ 27537593 (-) True XLOC_004168
TCONS_00007975 mRNA upstream 6569 27745618 ~ 27778831 (-) True XLOC_004172
TCONS_00007977 mRNA upstream 78252 27817301 ~ 27827533 (-) False XLOC_004175
TCONS_00007978 mRNA upstream 79027 27818076 ~ 27827442 (-) False XLOC_004175
TCONS_00007979 mRNA upstream 81550 27820599 ~ 27827528 (-) False XLOC_004175
TCONS_00007980 mRNA upstream 81575 27820624 ~ 27827472 (-) False XLOC_004175
TCONS_00007964 other downstream 201710 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 201898 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 956601 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007954 other downstream 1127821 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007950 other downstream 1329512 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007992 other upstream 339099 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008006 other upstream 851839 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1913641 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 2070648 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 2157323 29896372 ~ 29909625 (-) False XLOC_004196

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_04342831_04359440.mRNA True 3574 mRNA 0.52 15 CI01000306 4342612 ~ 4359834 (-)
bowfin (Amia calva) AMCG00017235 True 5140 mRNA 0.49 17 CM030122.1 51344359 ~ 51363221 (-)