RNA id: XM_026920599.2


Basic Information

Item Value
RNA id XM_026920599.2
length 4692
RNA type mRNA
GC content 0.47
exon number 18
gene id si:ch73-217b7.1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21138225 ~ 21171926 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTGGCTTAGAGACTGATAAAAGcgaagaaaagaggaaagacTGAGGATTCTGTGACGTTCTGTAACATTCAGCAGCATGAAATGTCTTCGCTGAGCTGTTTACCTCCTGGATTAACAGATTTCCTTTTTGTAATTCCTTGTCAATTGTTTTATCCATCTTTCTGGATCTATCTGCTTTTAGTCACTTCTTGTCCTGCTATCTCATTTCTCGCACACTGTCTCTTGCTCTTGCTGTCTTTCTGAGTGCACTTGGATCAGATGAGCAGCCTGAGTGCTAGTAGTTAGCATTAGCGTGAGTAAGCTCACTGGACggaagcacacacactcacggagagggagagagagagagagagaaagagaggaaaacacAGAGTAGAGCCAGGACGAGGGCTGTGCAGAGGGACGGAGGATGCTGTTGCCCCCCAGGATAAGGAGGGGGGGCAGCAGGTCGGTCATCACCtccctcaccaccatcaccgaGGAAGACGAGGAGCAGCGGAGCCGGCGCAAGAAACGCAGGAGAGGAGaCTCTGACTCCCATCTCAGAGGCGACGAAAAGAAACCTTTAAGTCGGCCAGACTCGACAACCCCTGGACACAACACGTACATTATATCCAGCTCTACGGACATACAGAATACAGGGAGGccagAGGCTCTGGTGCTCAAACTcgatgagagacagagactggctcgagagaggagggaggagagagagaaacagagtgctgcgcGAGAGGCTCAGTTATTGGAGCGTGAGGAGCGAGCGAGGCTGTACTATGAGAAGCAGCTGGAGGACAGAAGGAGGCGTCTGGAGGAGCAAAGGCTTAAGGAGGATAGGAGGCGCGCAGCCGTGGAGGAGAAACGAAGGCAGAAACTAGAAGAGGAGAAGgcTCGGTATGAGGCTGTGGTGAGAAAGACTCTGGAAAAGAGTCAGCGCGTCAGACCGAAGCAGAACCGCTGGAGCTGGGGAGGAACCCTAACCTCCAGCACCTCGCACAACAGTGatgCTGACAGACGGTCAGTCTCCACCATGAATCTGTCCAAGCACATAGATCCAGTCATAAACAAACGACTGTCTTCATCTTCTGCCACACTGTTAAACTCACCAGAtagaggTATGCGTCGTATGCCTCTAACCCCATGGGAGAGCAATGTAGTCAGTCGCTTACAGACACCAACGCACTCATACCTGGCCAGAAGCCGTAGTGCTGTATCTCTGTCTGGAGATGCAGTGACCCCCATTTGTCCTCGCTCAGCATCCTGTCACCAAACGAGCTCACTGTCCATCAAGGCCCTGCAGTCACGCAGCACCGAGCGACCAATCAGAGCCGGCCTCAGCCTTGAGCGAGCGGTCAGAGCCGGGCCAGATGGCAACACATGCAGGAAGGCAGCCCATGCTATGCTGGTTGATAGGAAGGATAAGGACTACGTGCGCAAGTCCTGGAGTAATCTGTCCTGTCCCATGCCAACTCTGAACCTCACCACCACTAAGAGAGCTCCCTCTCCTGGCAGCCAGCGCACTAAAGTCAGCCAGCCGTCATCTGCCAGGAGTTCCACTAAACCACCTCAGAAGTCTCCGATGTCCAAAAGATCCagatctcctcctcctcctcgatCTTCCATGCCCTTATCTCCTAGCAACCCTTCCCTGTTGCCTGGTAACCTGCGACCCAGCCGGGTGACATCAGAGAGCCCGAGAGTGAGTCTGGAGGATGAGAAGGACctaaaggaggaagaggaggccAAAAGAGAAGAGACGGAGGGCAGAAgggaagaggatgaggaggcaAAACAAGAGAAGAAGGAGCAGAATGAAAGTCCTGCTAAAGAAGCAGCTGAAATCTCCACACGTAAAGCAGAGTCCAATGGTGTAGAGAGGGTGGCGAGTCCTCCAGCAGTCAGAGTCAGTGCAGGAACCACAGACCCAGAAGAGGCGTCTCGACTGCTGGCTGAGAAACGACGGCAGGCCAGAGagcagagggagaaagaggaggaggagaagaggcaGCAGGAGGAGGCCGAGAGGCGACACAGAGAGGAGATGGCACGGAAGATAGCTGAGGAGAGAGCGAAAAGAGAAGAGGAGGCCCAGCGTCTGGCTGAGGAGAAGAAACGtaaggaggaagaagagaggcGCTTAGAAGAGGAGAGActccagagagaaaaagaagaagaagcagaacgCCTGCAGAgacagaaagaggaagaggaggctcGGCAGCGTGAAGAAGCAGAGCGTTTGcgtcaggagagagagaaacacttcCAGAAAGAAGAGGCTGAGAGACTTGAGAGGAAAAAgCGTCTCGAGGAGATCATGAAACGCACACGCCGTTCAGATCAGAAAAGCCCCGGTCAGAGGAACGGAgacgtgagtcagcagagttcTCAGGACACGGtgaatgTGGTCCCTGGGATCCCCTCAATCACTGTATCAGCTCCACAAAATCCTCACGCCACACGGCACAGTGACAGCAATGGACACACTAACCCTGACCTCAACGTACAcacactgccccctgctggacacAAAATAAGCACCGAAGCCCAGCTTCAAGAAAACGGCGTCGTCATGGAGACCCCGGCCTTTGAGGAAGTGATCGAGGTGCCCATGGTGACCAAGCTGTCCCGTCAGGAGGGAGACGGAGAGGAAGAGGACGAGAGGAGGAAGACGCCGCTGCTGGCTTTCAGAGAGAACGGAAGCACACATGACCTGAGCACATGGGAACAAAGCCAAGTCCAGCACCATGCAGGTGATGTCTGAAACCCTCAGAGAGCATGATGGGAAACAAAGTGTGACTGACACCCACTTAGTTTTCTCTCCCTTTACATTTTCTCCACATAGACACCTGGTTACTGTATGTGAGGAGAAAGTAACTATAACACACTCTTCTCAAGTTGTGGACAGCTCTCTAATCAGTTGTCCTTGCGTTTCTGTGATGCAGCTCCTACCTTCTGACCCCTCACCCCCCAACCCACCCCCCTCACACTAAAGTGGTATGTTCCTGGAACATAGAGGCTCAGTTGATTAACGTGCTGTTAGTGTGTATGTGGAAGCTCTGTGGATTTCAATCAGCTGTAAAGTCTGATCTAATACTTGaagttttttggtttgtttgtttctgttgagGTAAAATTCAGCAAAGTGCTAACCGTAGTGAGAGCGTTGGATGAAGGATGACTTTTGAAATGTTTAGAAACATCTGGGACTCGTTTTGCTCTGAGTAAACCCAGGAATGATGTGTAACCCATTGAACGCATCATGACTTTTACAAGAATGAAGAGAAAGTATGAAGAAATGGTATTTTCCTACTTCTTTATAAAGCTTTAATATACATTTGCTTCATGTTGACAGTGTTGCACTGGGGATCTTTATAGAGATGCACTGAAATTTAGAGTGAAAATTCTTGGCCAAGGAAAGgcccttttttcacttttcattcaCTGATCATTTCCTGAAAGAGTTAAAAATTCTGAAACCTTTGACCAGGAAAGTTTTTATTTCACCAACAATACTCAGACGTACAATAGtttcatgttattttatgttCTCTGCTCACATTTTTGGAGAAGTATCCTGTTGAAAgcacaaacattattattattattattattattattattattattatatttttggcTGATGGTCCAGAAAAACACTTACCTTTTTacctttcattttttcatcCCTTAATAGTTCAGAAAGTTAACATTGGCAAATTACTatggtataaaaagaataaaaacacttcaggacatttaGGTTTTCGGTTTCAGTTTTGAGCCAAGAATTTATTTCGGTGCATCACTACCTCTGACCTGAGTGAAGGCTCAATCCAAAGATCTCACCCACAAAACACTGTCTAATCTACTGTCTAATGCAGCAGATTTATGAGCTTTTTTAATTAAGATATTAATTGGCTGCCATGTTTGGAGAGGATTGGACGGTGCATGttgaggaagagggcagggtTTCTCTGCTGTGTGCTGACACAatcattacattaataataagtaaaataataagtgaagacaataaaaagaagaaagatgaAATGCTGCTATGTGTATCTTCCCTATGCCTTATCAGATCAGGACACGTGTGTTTGGGGTTTAAGGGCTGATTATCACCCTCCACAccacatttcatacattttacaGCCAGATTAGATCTTTGAGGCTTCATCTCGATTTGCTCAGTGTGCATACCTGCTCTAAACACCGCTGGATTGAGGATCTGCTCCAGGTTCGCTTTAGCTCTGTGAACGTTTGATTGACAGCAAATCCTGTTGCTGTTGTAATGTAATGCTAAAATGCAGTGCTAAGCTACTGTATAATGTGTTCAATGGAAACACTGTAAATCTAGATTtgtgtacagtaaatacagATATGACTATATTGTACAAAGACTGAAAAACAAGACGAGCACGACGGCTATCTGATATTAAACTGTAACCTGGTATCTGTACCAGCTAGAACAGAGAACTCCTCTTATCCCATAAATCACATAAATAACACTTAGTTTTAGTTTGGTGGAGTTTCTAAGCTCTCCACATTCATACTCTTGTTATCTTTATCCAGACTTCTTTTTCCTCATCTCTTTACTCCTCATTCTCATTTTCCCCCAAGCAGTCACATCTGTATagcatgtaaaaaattaaaatcaataaataattttgtttgaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306028 lncRNA upstream 10985 21115050 ~ 21132053 (+) True G258459
TU306031 lncRNA upstream 35023 21107347 ~ 21108015 (+) True G258462
TU306054 lncRNA upstream 37937 21103714 ~ 21105101 (+) True G258483
TU306047 lncRNA upstream 49194 21093329 ~ 21093844 (+) True G258476
TU306029 lncRNA upstream 54816 21085382 ~ 21088222 (+) True G258460
TU306264 lncRNA downstream 182514 21354440 ~ 21354730 (+) True G258680
TU306276 lncRNA downstream 212365 21384291 ~ 21386101 (+) True G258689
TU306345 lncRNA downstream 307306 21479232 ~ 21496565 (+) True G258753
TU306351 lncRNA downstream 328052 21499978 ~ 21510994 (+) True G258758
TU306346 lncRNA downstream 379992 21551918 ~ 21556438 (+) False G258753
XM_026920253.2 mRNA upstream 69981 21068173 ~ 21073057 (+) True agmat
XM_026921415.2 mRNA upstream 75821 21063095 ~ 21067217 (+) True pink1
XM_026921161.2 mRNA upstream 80661 21059776 ~ 21062377 (+) True cdaa
XM_034312061.1 mRNA upstream 86532 21052840 ~ 21056506 (+) False LOC113530567
XM_026921015.2 mRNA downstream 30564 21202490 ~ 21212264 (+) True LOC113530738
XM_026921203.2 mRNA downstream 53415 21225341 ~ 21227743 (+) True egr4
XM_026920376.2 mRNA downstream 56424 21228350 ~ 21238999 (+) True si:ch73-290k24.5
XM_026920081.2 mRNA downstream 70320 21242246 ~ 21257288 (+) True LOC113530257
XM_034312205.1 mRNA downstream 103504 21275430 ~ 21287608 (+) False LOC113530283
XR_004579743.1 other upstream 235788 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 237965 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 628843 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 744324 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1664143 19478302 ~ 19478895 (+) True G257622
TU306101 other downstream 56394 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 366328 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1139880 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 1499699 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 2199821 23371747 ~ 23383653 (+) True LOC117599309

Expression Profile