RNA id: XM_026943842.2


Basic Information

Item Value
RNA id XM_026943842.2
length 3360
RNA type mRNA
GC content 0.50
exon number 20
gene id git2b
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5033868 ~ 5157309 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCATTCcggaagtagaaaaaaaaatcaggctgtAGTGGAGGAGCAAGAGAACAAGGGCGGAACTGTCTTCATTTATTCCACTTTTTTAATATCCTGCGGTCGGTTTTCACCCCTGATTATCTTTCTTTACTAATCACAAGTGTTGCGTGTCACGAATGTGAAAGAAGCAGAACATTTCGAGGAGTTTTTGCAGTAAAAGGATGTCAATGAGGCCTCGCAACAGGGAAATCTGCGCTGATTGCAGCGCCTCTGAGCCTCGCTGGGCTTCGATCAATAGAGGAGTCCTTATCTGTGACGAGTGCTGCAGCATACACCGAGGTCTGGGCCGTCACAGCTCGCAGGTCCGCCACCTGACTCACACGCCGTGGCCCGCGTCGCAGTTACAGATGGTCCAGACTTTATATAACAATGGGGCGAATTCAATTTGGGAGCACAGCCTTCTCGACCCTTCCTCGATTATGAGCGGAAAACGCAAAGCCAATCCACAGGACAGAGTGCATCCCAACAAAACAGAGTTTATAAAGGCCAAATACCAGATGTTGGCTTTTGTTCATCGAATGCCATGTCGCGAGGATGACAGTGTGACTGCGAAGGATCTTAGTAAAcaactCCACTCGAGTGTGCGGACCGGAAATCTGGAGACGTGTCTCAGGCTGTTGTCTTTGGGAGCACAAGCAAACTTTTTCCATCCGGAGAAAGGGAACACTCCATTACACGTGGCGGCTAAAGCGGGTCAGCTTCTCCAAGCCGAGCTCCTCACGGTGTACGGCGCAGACCCCGGCGCTCCAGATAGCAGTGGAAACACACCTATCGATTATGCAAGACAAGCAGGGCATCAGGAGCTCGCTGACAGGCTGGTGGAGATCCAGTATGAACTGACGGACAGATTAGCCTTCTACCTGTGTGGAAGAAAACCAGATCACAAAAATGGACAACATTTTATAATTCCTCAGATAGCAGACAGCACTCTGGATTTGACTGAATTGGCTAAAGCTGCAAAAAAGAAACTTCAATCActGAGCAATCATCAGTTTGAAGAGCTGGCCATGGATGTTTACGATGAGGTGGACAGAAGAGAAACCGATGCAGTGTGGCTTGCAACTCAGAACCACAGCACTCTGGTGACTGAAACCACAGTGGTTCCCTTTCTCCCAGTCAACCCTGAATACTCGTCCACCAGGAACCAGGGTCGGCAGAAGCTGGCGAGGTTCAACGCTCACGAGTTTGCTACACTTGTGATAGACATTTTAACCGATGCAAAGCGCCGCCAGCAAGGGAATTCCCCGGATGTCAAGGaTAACGTGGAGCTGATTCTGAAAGATATCGGCAGCCGCCTCGGGAGCGAGAGCCAAGAGCCGGAACAGCCTGATTACGACAGCGTGGCATCTGATGAAGACGCAGAACGAGAGCCGGGCTCTGGGAAAGACGAGAGGACCAAGAGCTCGGAGTCGTCCGACCTATCTGACGGCCCGATCACCATGCAGGAGTTCATGGAGGTGAAGAATGCCTTGAATGCATCTGAGGCCAAGATCCAGCAGCTGCTCAAGGTCAACTGCCACCTGAGCGAGGAGCTGAGGCACATGCAGAGCAAGCTGAACTCCCTGCAGAACGAGAACAGCAATCTGAAATGGCAGGGCGCCAACAGCCTGGCGCACCCGCAGGAGCCGCAGCGACGGGCCCCGCCCCGCGGAGGCAGAGCCATGTCCATGTACGAGACGGGCTCGGGCATGAAGCATTACCATGCCAGAGCAGACGGTGCGCATCCTGAGCCTGGCAGCCTCACCCTCCAGCCCCTTCCTCCTGGTATTGGGAAGGGTCCCTCCATGGGCGCCTCCTCCCTCCCCACCTTCCCTTCCACCCTGTCCTGGGCGTGGGACGAGCGAGCCCAAAGGGGGTCCAGGGTGGAGGGAAAGAGCAGCACCTCTGAGAGCGACTATGATAACACGCCCAACCATGCCGAGCTGGACGACTCCAGGCCGAGCGTTCCCAGGACCGGTGGCCGGCTTGGAGAGGGAGCCATCCCCGAATCGGGTGATTTTGAGTGTGAGACGGATTCGGCGCTGCCCTCCACCGAGGATGTCATCAGCAAGACGGAGCAGATCACCAAGAACATCCAGGAGCTGCTCCGTGCCGCACAGGAGAACAAACAAGAGAGCTTCGTTCCTTGCTCTGAAAGAATTCATCTAGCTGTGACTGAAATGGCCACCCTGTTTCCCAAGAGGCCGAGTTCGGAGATGGTGCGCGGTTCCCTGCGGCTGCTGACCTCCAGCGCCAGCCGACTGCAGGGCGAGTGCCAGCGAGCAGCACCAGCCGACTCCTGCCCCGCCGACGCCCAGCTGGTCACGCAGCAGCTCATCCAGTGCGCCTACGACATCGCCAAGGCCGCCAAGCAGCTCGTCACCGTCACCACCAAAGAGAGCAACTGAGCCGCTCACCTTTTACCGTCCTTTTCATTTCAATGAAGACGACATCCCCTGtcgtcagttttttttttttttttttttttttttttttatacagcatCAGTATTATGAAaagtatttttatgttatatttttatttaaaggaatTTGGTTCATAGTGTCTGTTAACCAAATTTTAAGTTATAACTTTGGCATGGTAACATGTTCAAGTCTACAGGTCattagtttttacattttaccatCGTGTAGCTCAGTCCGTGCTGCCGTTCTCTGGTAACGTATCAAATGGTCATGTGACAGTGCAGTCTCTTGTAATAAAACCCAGCCataatttgtgaatatttaGTCCTTCCTGCGTGAAACACCACTTAAACCCTCATCCTGTGACTTAACAAATGTACAGTATCAGAAGTATACAACGTCTTTACTTGTAATGCTGAAGTCTATAAGCTGTAATAcctcatatatatacatagtagACTGTGCCAGACCTCCTGTTACCATGTCCCAGAGGCCCAAGGACACCGTTTTTGATTTGACTCAAACCACATTTATTTCGGCTTTCTAAACAGCTTCGTTCGAGTGCTCTGTTTTGCAAATGCTTCGCTGTCGTTTTCACttgcatttatttgtaattgtgCTTTGTGCAATTATGAATGGAGGTTCATCCAAAGGATGTGTGTTCAGTTGCCTTGTGTCTCAAAATCCATCAGCAGTTGCGCTTGTGATTTCTTTACGTGGTGCTAATAGTGTGTCCTCATATTCTTcagtatattgtataatatataaatgctgCTACGCTGTCTCCTACATATGCAACTAATAAGGTGGTGTTGGCTCAGTCCCATCTGCGTACAGGGATACCAAGAACCGTGACGGTTTAGCTTCTGTGAAAACCTTGCCATTGAATATAATAAACCAGAATTTATAACATG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579850.1 lncRNA downstream 130911 4901344 ~ 4902957 (-) True LOC117599392
TU312510 lncRNA downstream 147297 4882413 ~ 4886571 (-) True G263736
XR_004579828.1 lncRNA downstream 166883 4807202 ~ 4866985 (-) True LOC117599362
TU312484 lncRNA downstream 257360 4776294 ~ 4776508 (-) True G263712
TU312475 lncRNA downstream 314783 4710749 ~ 4719085 (-) True G263705
TU312739 lncRNA upstream 23473 5077849 ~ 5080642 (-) True G263918
TU312680 lncRNA upstream 51180 5105556 ~ 5110679 (-) True git2b
TU312682 lncRNA upstream 51180 5105556 ~ 5157309 (-) False git2b
TU313028 lncRNA upstream 468014 5522390 ~ 5522699 (-) True G264183
TU313033 lncRNA upstream 518626 5573002 ~ 5573292 (-) True G264188
XM_026943729.2 mRNA downstream 1226 5025155 ~ 5032642 (-) True gltpb
XM_034312795.1 mRNA downstream 48649 4976437 ~ 4985219 (-) True LOC113544909
XM_026943922.2 mRNA downstream 58727 4959324 ~ 4975141 (-) True zdhhc8a
XM_034312297.1 mRNA downstream 86054 4932161 ~ 4947814 (-) False arvcfa
XM_026943655.2 mRNA upstream 26378 5080754 ~ 5085163 (-) True srsf9
XM_026944030.2 mRNA upstream 61612 5115988 ~ 5168295 (-) True epb41l4a
XM_026943700.2 mRNA upstream 163287 5217663 ~ 5221213 (-) True LOC113544764
XM_026943950.2 mRNA upstream 192558 5246934 ~ 5251500 (-) True tdgf1
XM_034312416.1 mRNA upstream 537271 5591647 ~ 5611219 (-) True mfsd14ba
XR_004579849.1 other downstream 107225 4924389 ~ 4926643 (-) False npffr1l3
TU311964 other downstream 967485 4052989 ~ 4066383 (-) True G263262
XR_003404551.2 other downstream 1406575 3592911 ~ 3627293 (-) False akap1a
XR_004579784.1 other upstream 192558 5246934 ~ 5251500 (-) False tdgf1
XR_004579841.1 other upstream 1199563 6253939 ~ 6275764 (-) False LOC113544902
TU314157 other upstream 2193777 7248153 ~ 7249074 (-) True G265153
XR_004579809.1 other upstream 2396737 7451113 ~ 7467785 (-) False LOC113544794
XR_004579808.1 other upstream 2396737 7451113 ~ 7467785 (-) False LOC113544794

Expression Profile