RNA id: XM_026932751.2


Basic Information

Item Value
RNA id XM_026932751.2
length 1884
RNA type mRNA
GC content 0.40
exon number 4
gene id map1lc3a
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11224148 ~ 11235261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCCTGGGTTCTTGCATTGTGCAGTTGTTTTGACACACAGCGAGTCTGAAGATCAGCCTGAAACCTTCAGCGAGCTCGGAGCAAAACATTAAACAGCTCGGAAAGTGCTGAAATATCTGCTTCTCTCAGACTGCAGGCATGCCATCCGACAGACCTTTTAAACAGCGGAGGACATTCGCTGATCGCTGCAAGGAAGTGCAGCAGATACGAGAGCAGCATCCTAATAAAATTCCGGTTATCATTGAAAGGTATAAGGGAGAAAAGCAGCTTCCTGTTTTGGACAAGACCAAGTTTCTAGTGCCTGATCATGTCAACATGAGTGAACTGGTGAAGATCATCAGGCGTCGACTGCAGCTGAACCCCACTCAGGCCTTCTTCCTCTTGATCAACCAGCACAGCATGGTCAGTGTGTCCACCCCTATCTCCGAGATCTATGAGCAGGAGCGTGATGAAGATGGCTTCCTGTACATGGTCTATGCCTCCCAGGAGACATTTGGCTGCTAAGTTCTCCACTGGCCTCGTGTGATGGAGAAAGCCAAAAGAAGCCAGGAGAAAGAAAGCAGGTTTCAGCTAACCGTAGCCCTGtgatctctctgtttctctctgtaagACGTACCTTTCTCCTGCCATCATTACGTTAACACCACGTTCATTGTGTCTCATTATGACACGAGTGTGCATATGACAGCACTACTGTACCTGTTAGTTTGCCCGTTTAACCTTTTTATCAACTTGACTCTCTTATTCCACTTAGTAATATTAGCCTGTGTGTGTAAGGAGCTGTTGCGCTCTGGCCCTGTTTGTGCTTCAGTTGATTCTATGTTCTttgattttattgcttttattagGGCCAGTGTCTAAAATAATTAGTAACACGTTTCATGTCAATGTAAGTAGGCGAGTGTCtgttgtattcttttttttttttctttttaaagatttgTCTGTAGTTTTCCAGTAGTTTAGGTGATCCATTTTCCTGCTTGCTTGTAGTGATCAGCAAATCAGTGCTGGAGTGAGATTTTAAGATATTTcttcaaaagcaaaaataaaatcttagtAAACTCCTATAAAATTTTATGTATTAGCTTTTAAAGTAGGGCCTCAGTGTATGTACAGGCCCTCCAAATAAGGCTCCAAACCAATCTTCAGAACTTGTAATACTTATTCTCTTGTACCCTGCCCCATGTTCCCTTCCCTTTCAGTGAAATTGCCGTACCTCTGTTCAATTCAGAATTAAAGTCAATATAGGAGAATTGAGCTAGgaaagagaaaacaggaagcagctgAGCTGGCTAATGCTGCTTATGGTTTCATTAATGCTAAATATGGGTTGGAGTAGTTTTTTTAGTCCTTAATGTCCCCAGGTTTAAAATGTGGCGTGTGACTGTGGCCTGGAGCGCATATGAAACAGCAGCCTGTACTGTTAGCTTGtggacctaaaaaaaaaaaacaaaaacagctaaACAGATCCCCAGTGACCGTAATTCAGCCCTGCTGTATTTTGTGATAGGTCCTGTTAACTCTATTAAGTTTAAATAATATGCTTCTTTTGCACAAATAAACAGCCAAGAGGATAAACTTAATTTTCAAACAATTTTAGCACACAGTTGTAGTATGTATcttgtttctttcctttgtATCACTATGCGATATTTTTGCCTTCCGTTCCAACTTCAATGAAGGATTTATGATGCACTACATAGATTGCATGTTTTTCTCAAccttttttatatattgattTATGCTATTAgatttgttaattatttctttatttaaagtagaaaaaaaagtctttttagatgttttcaaACCAAAAGAATGAAATTAATATGTATCTATGTTTGAAACACAAGTGTATATAAACTATCATATGATTAGC

Function

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362384 lncRNA upstream 89424 11134515 ~ 11134724 (+) True G305735
TU362383 lncRNA upstream 94661 11129288 ~ 11129487 (+) True G305734
XR_003403810.2 lncRNA upstream 148558 11073762 ~ 11075590 (+) True LOC113538022
TU362514 lncRNA downstream 38324 11273585 ~ 11275616 (+) True G305849
TU362498 lncRNA downstream 63061 11298322 ~ 11300713 (+) True G305833
TU362499 lncRNA downstream 68029 11303290 ~ 11304633 (+) True G305834
TU362533 lncRNA downstream 75609 11310870 ~ 11312417 (+) True G305865
TU362532 lncRNA downstream 81926 11317187 ~ 11317500 (+) True G305864
XM_034314494.1 mRNA upstream 2608 11214752 ~ 11221540 (+) True dynlrb1
XM_026932973.2 mRNA upstream 2608 11214994 ~ 11221540 (+) False dynlrb1
XM_026932893.2 mRNA upstream 46022 11141236 ~ 11178126 (+) True unm_sa1614
XM_026932895.2 mRNA upstream 46022 11141236 ~ 11178126 (+) False unm_sa1614
XM_026932971.2 mRNA upstream 83835 11107291 ~ 11140313 (+) True fer1l4
XM_034314291.1 mRNA downstream 20753 11256014 ~ 11273479 (+) False cfap92
XM_026932759.2 mRNA downstream 21708 11256969 ~ 11273479 (+) True cfap92
XM_034314292.1 mRNA downstream 21708 11256969 ~ 11273479 (+) False cfap92
XM_026932760.2 mRNA downstream 21708 11256969 ~ 11273479 (+) False cfap92
XM_026932761.2 mRNA downstream 23985 11259246 ~ 11273479 (+) False cfap92
TU362496 other upstream 2633 11215015 ~ 11221515 (+) False dynlrb1
TU362445 other upstream 45675 11168459 ~ 11178473 (+) False unm_sa1614
TU362376 other upstream 111630 11111739 ~ 11112518 (+) True G305727
XR_004580251.1 other upstream 450706 10764274 ~ 10773442 (+) False LOC113539694
TU362531 other downstream 78923 11314184 ~ 11315436 (+) True G305863
TU362537 other downstream 90343 11325604 ~ 11326360 (+) True G305869
TU362623 other downstream 245408 11480669 ~ 11481100 (+) True G305955
TU362774 other downstream 279798 11515059 ~ 11515813 (+) True G306103
TU363207 other downstream 1222340 12457601 ~ 12462536 (+) True G306480

Expression Profile