RNA id: XM_026946118.2


Basic Information

Item Value
RNA id XM_026946118.2
length 3684
RNA type mRNA
GC content 0.43
exon number 9
gene id ahrrb
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17323911 ~ 17347484 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAGCTCGAGCCTGAAACACAAGGATGTAACCGCCACCCTGAGCCGGGTATATAAAGCCCTCAGACACATCTGTCCGGAGAAccgctctctgtctctttatagACACCTCTCAGATGTTAGCGGTTTTTTTCAGTCTTGTTTGTCTCAAATAAAAGTCTCAACCGATAGGCTATATTGTCCATACGCGAAAGGAAAACAGCTTGGATTTACCTGAGAGGTTTGCTGTTATCATTTGtttatagtgtttatagcgACTGGCCAAACATCATGATTCCACCTGGAGACTGTCTGTATGctgggaggaagaggagaaagcCCATTCAAAAGCAAAAACCAGCAGGAGTGAACCAGAAGTCGAACCCGTCTAAGAGACACCGGGACCGACTCAATGCCGAGTTGGACCGACTGGCCAGCCTGTTGCCCTTCACTCCAGAGGTCATCTCCAAACTGGACAAGCTGTCGGTTCTGCGTCTCAGTGTGAGCTATCTCCGCGTCAAGAGCTTCTTTCAAActATTCAGGAGAAATCAAACAAAAAGCAAAGCCCTGCATCCTGCAGCCCTGAGCCCAAAAAACACAGTCTCGGCAACAGCATTCTGGAAAGTGATCTTCTtcttgagTCTTTGACAGGGTTTGCGCTGATTGTTAGCTCAGATGGAGTCATCTTCTATGCTTCCTCTACAATCGTAGACTACCTGGGCTTCCATCAGACCGATGTAATGCACCAGAACGTCTTTGATTATATCCATGTGGACGAGCGGCAGGAGTTCAGAAGACAGCTGCATTGGGCCATGAATCCCCAGCAGGAACACCACTCTCCCTCAggaactgATGAAGACTACATGGTGAGAAGTCTGTTTAACGCTCAAGAGACAGACGGTGTCCCTCCTGAGCTTTCTCCATTCCTCACTCGCTGCTTCATCGCTCGAGTACGCTGCCTGCTTGACAACAAGTCCGGCTTTCTGAGGATGCAGTTCCAGGGCAGTCTGAAGTTCCTCCAAGGCCAGAAGAGGAAGAGTAAATCCGGAGCTTTGCTGCCGCCTCAGCTGGCTCTGTTCTGTGTGGCCGTGCCGCTTGTCCTGCCCTCCATCACCGAGCTCAAGATAAAGGGCATGATAAGCAAACAGAAAGTCTCCAACATCAGTGAAAAGAGGCTCCACATTTCTCGCACTTCTTGTGATGCTGGCGACATGACGCTTAACTGGCACAGTGGATCGTGGGCGACTCTTACCAAAGAAGGCATCCAGTATAAAAGTGAAGGTCTCTGCAGCCAGGACGAGCCCCTTAACTTCTGCGTGTCCTCTGTGGCGGTCCATAAAGTGCAGCCTACGCAAAGTCCCTGGGACTCTCGGTGTCACTCTGCCTCACACAGCGGCTACTTCAGCAGCAAACTGGGGAAGCACGTCCAGTCCGGAAAATTCCGCTTCTCCCCAGGTTGCACTGCTGCGATCTCCCAGTGTAAGCAGTATGGACTCAGCGATAAGGACGGGTACTGTGGGTACAGGAAGACTGAGAGTAGATACATGGCCAATAACGATTGTTACAGCAACCTACTGCTGCCCGAGACTGCCATAAAGACGGAGCACGACTCTGACTCGGAGAACGGATGCAGCGTATATGGCGCGCCCCATAACGGCGTCTGGCGCTACAGCACGCCCTTCCCTGATGCAAACCAGGTGAAAACAGAGGAAGACTATGATGAGTATTATTGCAAGCCTAGCATCACAAACGTCTCTAGCATCAACGGACACCACAAATATCTCTACACAGGAGCGGGCAGGCCGCTAAAATGTGTCCTTAATAAAGACCATTCTGATCCCCACAGCCTCCAGGGTACAAACTGTCACGCATACATGAACAGCTCTGAGTCCAAGGTCTTTATGCAACCCGACTACAAGCTGAGCTACGAGGTGAGGAACCACAGTCTTCTTCACCCCATCAAAAGAGAACCCATGGACTCTCTGCCCTGGACTGACGGTAGCCATGATGTTATTCAAGAACACATGGACAGAAATGAGGCAAATTGTGCACTGAACACAGTGGTGCACAAAACCAGTGCCTATTTGTATATGCAATAATCTTTAGCGCCAAATGCTACATTTTGAAGCTCAGGTATGTGTCTAATTATAGACAGGTGTTAGAACACTTGTTTTTAAGGGCTAGTTCTCTATTAtggcactttaaaaaaaatgacagagtaTTTTGTATGTAATACTTGTAGCATAACCTTTGCAGTTACCTGGTATGGAATTTTACATCATATACAGTTTGCAACTATattgtatatttcatttattgcaTCTTCACACAACCTGATTTTAAATGTACAGACCACAAAAAGAAGGGAAAATTACTTGGTTATGGGATACTATTTATACTACATTGAATTCTCCGTTCTGATTGGTGAGAAGATGTTGaataatttctataacagcagctctgagagtcgCGCACGCTTTCTAATGCgtcatcatttctatagtaacagctcactcacagggacttgtacggcaaacattccacataatctaagactaatgataaatagattttaaaaatatgtgttgttatttaacaaaaaatgtataatcattcaTATCATATATGGATTtgtataaggagatgtttatttaacagtaatgaaggagtctccagtgtcagtactttgtttTCATGGCTCAAAGGAGTTTGTGCTtcctggtttctctgtaacatgagacacttttttttgtttggttgttttttttttcttcaagactgagagaaaaaagagagcctggtgaatgaacgactgtttatagctgctataacataagtgataacaggaactaagttgtttcGTGGACATTTTCTTAACTAAATGGATCTACAGTGTGACGTAATAACTTGAAAATTTTAATCAAAGGCAAAATTGCTGTTTTATAATAGGTTTAAAAACTtcaggcatgctgttataggaaatatcaACTTGATTTGAGAAATTTCACTTGCTGTCAACCACAACTAGTTGAATAAACTTGTAGACTTGTgtattctgttgtttttcagtGCAACCGTTAACGTTAACATGGTGCAACAACGAAATGTATTGATGGAAAACAGTATTCTGCATCGACAGAAATTGTGGCTTGTTCTGTCATTTTGAATTGTAAGCAGTGGTCTGTTTGCGTAGAAACCGGATTTTAAGTCAAAAACTCAAttctgggttttattttttattggttTCTGAAATAAAGTTGAAAAACAAGTTTTGATTTGAAGATCTCAAACAGAGGATGATGCATGCGTTAGAGTCAACTAAAAAGTATCATCTGTTTCTGTATCGTCTGATCAAGAGCACCATTTCATCCGAGGACGAAGATGCTCCTGGCGTCAGATTTGCATGTGCGTGCGAGCGTGCAGGTGACAGGGTGcacttgtgtgtgagtgagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgtatgttatCATgctgcaatgaaaaaaaaattattgcctTATGTCTGAATAAATGTTCTAATTTAACTTTGTCTAAAAATCTTTTGTTTGATAACAGTTGATATTTTGGAGTAAAAAGATAATATTGGTATCattaaaaagtttaaagttaaagtctttttttgtgACTAAATGATGGTGCAGGTcccattataaatattattggACTTTTATG

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0001191 obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
K09094 AHRR, AHH; aryl hydrocarbon receptor repressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380963 lncRNA upstream 363177 16958745 ~ 16960734 (+) True G321704
TU380843 lncRNA upstream 430887 16892813 ~ 16893024 (+) True G321602
TU380827 lncRNA upstream 464333 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 531473 16792128 ~ 16792438 (+) False LOC117595733
TU380818 lncRNA upstream 534304 16789186 ~ 16789607 (+) True G321585
TU381407 lncRNA downstream 133901 17481385 ~ 17482562 (+) False fuz
TU381408 lncRNA downstream 134429 17481913 ~ 17483644 (+) False fuz
XR_004580280.1 lncRNA downstream 178087 17525571 ~ 17537160 (+) True LOC117599934
TU381461 lncRNA downstream 241588 17589072 ~ 17666213 (+) False npc1
TU381471 lncRNA downstream 283730 17631214 ~ 17631512 (+) True G322127
XM_026946145.2 mRNA upstream 2874 17313082 ~ 17321037 (+) True mcm6l
XM_026946203.2 mRNA upstream 12707 17295164 ~ 17311204 (+) True cul1a
XM_026946359.2 mRNA upstream 30745 17238926 ~ 17293166 (+) True cntnap2b
XM_026946338.2 mRNA upstream 242253 17075730 ~ 17081658 (+) True xcr1b.2
XM_026946138.2 mRNA upstream 251954 17066201 ~ 17071957 (+) False xcr1b.1
XM_034314560.1 mRNA downstream 1426 17348910 ~ 17361297 (+) True exoc3
XM_026946126.2 mRNA downstream 1427 17348911 ~ 17359973 (+) False exoc3
XM_026946125.2 mRNA downstream 1427 17348911 ~ 17359973 (+) False exoc3
XM_034314559.1 mRNA downstream 3263 17350747 ~ 17360470 (+) False exoc3
XM_026946225.2 mRNA downstream 52907 17400391 ~ 17427264 (+) True si:ch211-106n13.3
TU380835 other upstream 471487 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 1136870 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 1138344 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 1139769 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 1191547 16131335 ~ 16132364 (+) True G321257
XR_004580277.1 other downstream 131350 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 131350 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 223165 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 879078 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 879078 18226562 ~ 18227136 (+) False si:ch211-162e15.3

Expression Profile