RNA id: trnar-ucu_12


Basic Information

Item Value
RNA id trnar-ucu_12
length 74
RNA type tRNA
GC content 0.59
exon number 1
gene id trnar-ucu_12
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10187751 ~ 10187824 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAGTCCCGGCAGAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376333 lncRNA upstream 625 10186306 ~ 10187126 (+) True G317761
TU376326 lncRNA upstream 30221 10157277 ~ 10157530 (+) True G317754
TU376260 lncRNA upstream 80830 10105766 ~ 10106921 (+) True G317703
TU376171 lncRNA upstream 247514 9939969 ~ 9940237 (+) True G317633
TU376158 lncRNA upstream 307995 9878915 ~ 9879756 (+) True G317621
TU376532 lncRNA downstream 316339 10504163 ~ 10510193 (+) True G317939
XR_004580283.1 lncRNA downstream 329764 10517588 ~ 10520208 (+) True LOC117599937
TU376543 lncRNA downstream 336662 10524486 ~ 10524774 (+) True G317946
TU376562 lncRNA downstream 386990 10574814 ~ 10575152 (+) True G317963
TU376563 lncRNA downstream 387489 10575313 ~ 10575547 (+) True G317964
XM_026925414.2 mRNA upstream 1684 10173820 ~ 10186067 (+) True sdhc
XM_026925209.2 mRNA upstream 57029 10061226 ~ 10130722 (+) True atp1a2a
XM_026925570.2 mRNA upstream 134211 10042888 ~ 10053540 (+) True mpz
XM_026925572.2 mRNA upstream 134211 10042888 ~ 10053540 (+) False mpz
XM_026925571.2 mRNA upstream 137987 10042888 ~ 10049764 (+) False mpz
XM_026925460.2 mRNA downstream 8284 10196108 ~ 10288224 (+) True cadm3
XM_026925461.2 mRNA downstream 8284 10196108 ~ 10288224 (+) False cadm3
XM_026925462.2 mRNA downstream 8285 10196109 ~ 10288224 (+) False cadm3
XM_034314828.1 mRNA downstream 8887 10196711 ~ 10288224 (+) False cadm3
XM_026925708.2 mRNA downstream 104006 10291830 ~ 10347388 (+) True kirrel1b
TU376185 other upstream 209850 9959329 ~ 9977901 (+) False pip4p1a
TU375892 other upstream 772587 9412323 ~ 9415164 (+) True G317390
TU375607 other upstream 1374931 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 1918553 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 1923690 8263339 ~ 8264061 (+) True G316744
XR_004580322.1 other downstream 348607 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 348607 10536431 ~ 10562614 (+) False capn10
TU376560 other downstream 376011 10563835 ~ 10568896 (+) False eif4e2
XR_004580315.1 other downstream 1212060 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 1279475 11467299 ~ 11469499 (+) True G318439

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnar-ucu-121 True 74 mRNA 0.59 1 NC_048592.1 1642138 ~ 1642211 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_685 True 74 tRNA 0.59 1 NC_053125.1 7837221 ~ 7837294 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1284 True 72 tRNA 0.56 1 NC_053133.1 3168787 ~ 3168858 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_685 True 74 tRNA 0.57 1 NC_056702.1 26262920 ~ 26262993 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1284 True 74 tRNA 0.59 1 NC_056705.1 12683158 ~ 12683231 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_40 True 74 tRNA 0.59 1 NW_019172835.1 896993 ~ 897066 (+)