RNA id: XM_026937595.2


Basic Information

Item Value
RNA id XM_026937595.2
length 2032
RNA type mRNA
GC content 0.42
exon number 15
gene id nap1l4b
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2613532 ~ 2627644 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catgttcatgttcatgtgctGCACTTACAATCACAGAGACCAGGAGGCGCTAGCACTGGGCTTTAGCACTGATACAACAAAGTGCTGAAAGTATCCATGTGAAGAATAACAGCTCTGGAAAAAGAGAATTCGAGCTGTGTTTTTATGAGATGGATGGTGATAAGATTGAAGCCAAAGGTAAGGTAGGCGATCTGGTGATGCAGAACCCACAAGCACTGGCAGCTCTTCAGGACAGACTAGACAACTTAACACAAAGTCCTTCAGTTATGGACAGCTTACCACTGTCCGTCAGGAGAAGAGTCAACGCCTTAAAGAATCTGCAAGTCAAGAGTGCACACATAGAAGCCAAATTTTACGAGGAGGTACATGAGCTGGAAAGAAAGTACGCTGCTCTATATCAACCACTGTTTGACAAGAGGAAAAGCATTGTAACTGGTGCAGTGGAACCTACAGATGAGGAATGTGAATGGCAGAGTGATCACGAGGATGAAGAGCTGGCAGATGAGCTACAGAAGAAAGCCTCCATAGAAGAGAAGAAAGCGGAAGAGGAGGGCTCTGCCGAGGAAAATCCCAAAGGAATTCCCGAATTCTGGCTCACTATATTCCGCAGTGTGGACATGCTGAGTGATATGCTACAGGAAGCCGATGAGCCAATCCTTAAACATCTACAAGATATTAAAGTGATATTTTCTGGACCCAATGAACCTATGaGTTTTACTTTAGAGTTTCACTTTGAACCTAACAGCTACTTTAAAAACACGGTCCTCACAAAAGTCTACAAGATGAAGTCGGAACCTGACGCCGAAGATCCTTTCTCCTTTGAAGGCCCGGAGATCATCGactgtgagggATGTGAGATTGAATGGTACAAAGGGAAAGATGTTACCGTCAAAACGATtaagaaaaaacagaagcacaaGGGCAGGGGTATCGTGAGGACGGTCACTAAACAAGTGCCCACTGACtccttttttaactttttcaacCCAATTAAAGTTTCCCCAGATAGTGAATTGGATGAGGACTCGGAAATTACTCTAGCCACAGATTTCGAAATCGGACATTTCTTCAGAGAGAGGATAGTACCAAGAGCCGTGCTGTACTTCACCGGAGAGGCGCTGGAGGATGACGAGAGCtttgaggaagaagaGCTTGATGAAGGTGAAGAGGAGGATCAAGAGGATGATATGGAGGAAGACGAGGACGAGGGAGATACAAAGGCATAAGTCATTtgtcacttcatgcatttctaGAGCGGAGAAGCCCAGCCTGCAGAGTGcaaacagcagtaacagacTAGCTCCACCTGCAGCAAGTCAGTTTCCTGCTCAGCGTCGCCTCTGCAGAACAGTCATCCTAACCAAACAGCAAACATCAACAGAATAACAttgtgcatgatttttttttttttcctccaaaaaatGATCTCTGTTACCAAAAATTGGTAGAATAAAACAACGAAATTCTGTTCATAACTGTGGGTTATTGCATTCTGAGCAAACTGCCGATTGGTTTATGTTCTAAAATCgttaaaagttttttgtttgtttgtttgtttttaatccagACACACATTCCGGAGGCCCTTGCATTTGGAAAGTTGGAATCAGATTAATTCCAAAGTTAattgatttaacttttttgaCTTGATAGTTTACTCAGGGTTTTTTATGCTGAGAATACATGCACACGCTCCGTTGTGAAACCGCTGATAAGAAACTGATCCCACTtcgtccttttttttttgttttgttttgtttttttgtttgtcttagGTTCTTACGGTTATTGTTGCtccaaaaactttttagatctATTTCAAATTATTCTGAGGTTATTTATATAAAcgttgctttttttaaatggtgttAAACTACACATACTGTACGTGTTCCCCCCGATGGATTTCAGAAAGTGGAAGAGCGTTGTCTCTTTGCCCTGTATGTCCTGTGTCCCTACCTTTAACTACAATGTTGTTGCTTTACTGCCCCGAGCGCTTACTAAAGAATTAAATATCAATATTGCCAAAAGA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11282 NAP1L4, NAP2; nucleosome assembly protein 1-like 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425292 lncRNA upstream 21262 2592064 ~ 2592271 (+) True G358965
TU425227 lncRNA upstream 179243 2434081 ~ 2434290 (+) True G358908
TU425218 lncRNA upstream 226357 2385298 ~ 2387176 (+) True G358903
TU425687 lncRNA downstream 66830 2694474 ~ 2696538 (+) True G359293
TU425686 lncRNA downstream 67226 2694870 ~ 2696538 (+) False G359293
TU425722 lncRNA downstream 157983 2785627 ~ 2809785 (+) False cilp
TU425723 lncRNA downstream 164659 2792303 ~ 2823338 (+) False cilp
TU425729 lncRNA downstream 203639 2831283 ~ 2832473 (+) True G359324
XM_026937750.2 mRNA upstream 3359 2586847 ~ 2610174 (+) True rfx7a
XM_026937751.2 mRNA upstream 3359 2586847 ~ 2610174 (+) False rfx7a
XM_026937648.2 mRNA upstream 38124 2572870 ~ 2575409 (+) True calml4a
XM_034299759.1 mRNA upstream 40793 2564557 ~ 2572740 (+) True cln6a
XM_026937424.2 mRNA upstream 108972 2470115 ~ 2504561 (+) True slc7a10a
XM_026937765.2 mRNA downstream 9494 2637138 ~ 2694287 (+) False igdcc4
XM_026937768.2 mRNA downstream 9494 2637138 ~ 2694287 (+) False igdcc4
XM_026937767.2 mRNA downstream 9494 2637138 ~ 2694287 (+) False igdcc4
XM_026937766.2 mRNA downstream 9494 2637138 ~ 2694287 (+) False igdcc4
XM_026937771.2 mRNA downstream 9494 2637138 ~ 2691054 (+) False igdcc4
TU425115 other upstream 274775 2321171 ~ 2338758 (+) False c25h16orf87
XR_004577234.1 other upstream 708942 1890574 ~ 1904591 (+) True LOC117596061
TU424567 other upstream 2174647 426896 ~ 438886 (+) False cmtm4
TU424578 other upstream 2261764 348769 ~ 351769 (+) False ccne1
TU425321 other downstream 8645 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 1095382 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 1114142 3741786 ~ 3745457 (+) False cylda
XR_004577248.1 other downstream 1958968 4586612 ~ 4764886 (+) False fto
XR_003404141.1 other downstream 3381949 6009593 ~ 6009707 (+) True LOC113541027

Expression Profile