RNA id: XM_026937615.2


Basic Information

Item Value
RNA id XM_026937615.2
length 2175
RNA type mRNA
GC content 0.48
exon number 10
gene id dnaja2a
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2287070 ~ 2298515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAGTAGCTCCACTGCGCATGCGCTGGTTTCCTCTCTTCACCTCCCTGCGCTCAGCTTCACCATGGCGAACGTTGCCGACACAAAACTCTACGACATTCTCGGCGTGTCTCCTTCAGCGTCTGAAAACGAGCTCAAAAAGgCTTATCGCAAATTAGCAAAGGAATATCACCCGGACAAGAACCCCAATGCTGGAGACAAGTTCAAAGAGATCAGCTTTGCGTACGAAGTGCTAACTAACCCAGAGAAGAAGGAGCTGTACGACCGCTATGGAGAGCAAGGCCTGCGAGAAGGGGGCGGAGGAGGACCCGGCATGGACGACATCTTCTCTCACATTTTCGGCGGTGGCCTCTTCGGCTTCATGGGCGGTCAGGGGCGCAGCCGGAACGGCGGCCGGCGGAGAGGCGAGGACATGGTGCACCCTCTCAAGGTTTCACTTGAAGATCTGTATAATGGGAAAACAACCAAATTACAACTGAGCAAGAACGTCCTTTGTAGCACTTGTAATGGCCAGGGAGGGAAGACTGGCGCAGTGCAGAAGTGTACGACCTGCAGGGGGCGTGGTATGCGCATCATGATCAGACAGCTGGCTCCTGGCATGGTCCAACAGATGCAGTCCGTCTGCACTGACTGCAGTGGTGAAGgcgAGGTGATCAGTGAGAAAGACCGCTGTAAAAAGTGCGAGGGGAAGAAAGTGGTGAAGGAGGTAAAGATCCTGGAGGTGCACGTGGACAAAGGCATGAAACACGGGCAGAAGATCACCTTCGGAGGAGAAGCGGATCAGGCGCCGGGCGTGGAGCCTGGAGACATCGTCCTCGTCCTGCAGGAGAAGGAGCACGAGACGTATAGAAGAGACGGACACGACCTGCACATGACCCACAAGCTTCGGCTGGTCGAAGCACTTTGCGGTTTTCAGTTCGTCCTGAAACATCTGGACGGCAGACAGATCGTGGTGAAATACCCAGCTGGCAAAGTCATCGAGCCAGgttCTATCAGAGTTGTGAGAGGTGAAGGGATGCCACATTACCGCAACCCCTTCGAGAAAGGAGACCTGTTCATCAAGTTTGAAGTTCAGTTCCCAGAGAACAAATGGATCAGCCCAGAGAAACTATCGGAATTGGAGGATCTGCTGCCCTCGCGCGCCGAGGCTCCCATAATCTCGGGCGATGCAGAGGAAGTGGACCTGCAGGAATTCAACGTCAGCCAGAGCTCATCCGGCAGCCATCGGCGCGAAGCCTACAACGACAGCTCTGACGAAGAGGGCGGCCATCACGGCCCCGGGGTGCAGTGCGCCCATCAGTAAGCATGACCATCCCAACCTGTCTGGAtccagagaaggaaaaaaaaatgttctagtTGCACAACATCAGATCAACAAAGgtgtggctgttttttttttttttcttcttccgtCTGATTGGGGTTCGCCTTAAACAGCGAGTATGCTGCTTTCCCTAGTGAACGCACATATGAGCCCGTAGCTCCTCCCTCTTTCCTCTCTGGCAGCCTCCCCTTTTAGTTTCCTATCCAGGCAACCTCACATCAGacggaggagaagaaaaaaggtCGTTTCTCTTTTACTTGGTGTGTaacttgcatttttttctgttgttgttgttgtttctgctgtCAGCATAGTATTTAGAGTTAATTTAAAACTAATCCCAACGTGCAGTTCTGGCCTTGGACTCGAGCCTCTTTATTTGTAGAgtatgtttgtgtgagagagaaagagaccgTAAAAGAGAAAAGTCctttaaataagacaaaaacacctTTGGGACATTATAATAAGCATCACATTTTTAGGTTGGTTTGTATGTATTTGTGCTTGATTGATTTTTACCACTTTACTTTGtagatttttactttttttttttttcttcctcttctttctgtTATATTTTAAGAATTGGAACAAGAGTCTACAGCATTGTGTATAAAATTAAAGTGTTTGTCATTTAAGCTTTATGAGCTGCAGTTATGATctagtttaaataaaatcttcacTTGCCTGTATCTGTCTTCAGCCcaggtgcatgctgggaaagcACTGAAacatccaaataaaaaaaaaaatcgtattATGAAACAAGTGGGTGGAAAGCAGCTATAGGCTTATAacttctgtggaaaaaaatttatgaagttgttaaataaaactatCTCTCCAAAA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09503 DNAJA2; DnaJ homolog subfamily A member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425171 lncRNA upstream 93647 2193163 ~ 2193423 (+) True G358858
TU425144 lncRNA upstream 283356 1997203 ~ 2003714 (+) True G358834
TU425132 lncRNA upstream 306476 1980220 ~ 1980594 (+) True G358828
TU425086 lncRNA upstream 358757 1925808 ~ 1928313 (+) True G358796
TU425010 lncRNA upstream 571183 1715546 ~ 1715887 (+) True G358726
TU425109 lncRNA downstream 22609 2321124 ~ 2386730 (+) False c25h16orf87
TU425110 lncRNA downstream 22609 2321124 ~ 2322314 (+) False c25h16orf87
TU425217 lncRNA downstream 68168 2366683 ~ 2366926 (+) True G358902
TU425218 lncRNA downstream 86783 2385298 ~ 2387176 (+) True G358903
TU425219 lncRNA downstream 86783 2385298 ~ 2387176 (+) False G358903
XM_026937401.2 mRNA upstream 83472 2177978 ~ 2203598 (+) True LOC113540805
XM_034299457.1 mRNA upstream 112101 2020720 ~ 2174969 (+) True itfg1
XM_026937736.2 mRNA upstream 853752 1303881 ~ 1433318 (+) True cdh8
XM_026937737.2 mRNA upstream 853752 1303881 ~ 1433318 (+) False cdh8
XM_034299423.1 mRNA upstream 853752 1389832 ~ 1433318 (+) False cdh8
XM_026937439.2 mRNA downstream 22617 2321132 ~ 2338762 (+) True c25h16orf87
XM_026937382.2 mRNA downstream 49306 2347821 ~ 2384488 (+) False mylk3
XM_026937380.2 mRNA downstream 55374 2353889 ~ 2384488 (+) True mylk3
XM_034299853.1 mRNA downstream 93941 2392456 ~ 2431492 (+) True vps35
XM_034299458.1 mRNA downstream 136118 2434633 ~ 2435076 (+) True LOC117596027
XR_004577234.1 other upstream 382479 1890574 ~ 1904591 (+) True LOC117596061
TU424567 other upstream 1848184 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 1935301 348769 ~ 351769 (+) False ccne1
TU425115 other downstream 22656 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 337774 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 1424511 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 1443271 3741786 ~ 3745457 (+) False cylda
XR_004577248.1 other downstream 2288097 4586612 ~ 4764886 (+) False fto

Expression Profile