RNA id: TU187785


Basic Information

Item Value
RNA id TU187785
length 5011
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G149253
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9280063 ~ 9285151 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTGGTGGTCATAAACTGCTGCATATTTGTTTAGTTATAATTATGAAACTATACATTAGTTTAGACAGTCAATAGTCTAGATTTCTGATTTCCTGATACTTTTGGGCAAGTCAGTTCACTGGAGACATagtcaacacaaacacagattgGCTTCAAAGACTGagtttttttattcatgtattgaGTTTGTATTGTAGTATTAGGTGGAAAGTCAGCAGTCTACAATGCCTTGCTCTTGACATCTTTCACACCTCAGCTGTTTGGTAAAAGTACAGTATCTGTACTTTTGTATCACTCAGCTGCAGACAAATCCACAAGTAAAAGAATTACTACATGTTCAATCACTAGATAGTCTTTTTCAACCATGACATGATTAAATCACATGACAATTGGTTCGGTTTTGGTAGGAGATATCATTCTGACAACAGTCTAGAACACTTTCTGTAACTTGTAACACACAATAACTGGTTTGTGTCCTGGAAAACACAATTATGAAACAGAATGAAATGACCAGCCCTGACATGGgatattacaattatttgtagGGCTGGACCAAATAAAATCATTCACCTACTGGCCAATATCAAAGCAAAATCTCATATGCTATCGTGGTTTATCTTATAAGGAGTAAAAAGTCAccactggaaataaaataaacacacaataaggTACAAGTTGCCTTTTGTAAATTGCCTTTTCCTGGTAGGAAAGTTATGATTTGGTTTAGGCCTTAATTAAGCACAAGAAACACTCAAGGGAAAAAATactcaatttatatatttttcttcctgttaCTTTGACAGGCATCCTCTGTACAATTAACATAGCCTACTTTTAAAAATCATTGTGGTGTTTGGAGTTTCATTTCCTCAGGCAGtatgcaacacacacaaaccttttAATCCAGAGTCTGGCAGCCCCTGTATGAGTAAAGTTAGACACAATGGCAATGAAAGGCAACGCCACAATATTGTTCTCTATTATGCTGCAGCAAATGTGCCCCAGGATGCCTAGACATTTGTTCACGTAACAACTAGGTAGCTAAACAGACATGTCCTCCAACCAAAGgattataaaaacaaagtaataaacatTATTCAATCATAATGATGGCctatatacaaacatatttaaaactatttgtgTTGATGATGATGGAAAAAGAGCTCATTTCACTTGCTTtagctgaaatatatatattttacaggtgTCCCAGATGTCCCATTACTCTcctaaatattgtttaaaacattatgtTAAACAGGGATGACATTGTTCACCCATTGGGAGACACAGAAAGCATGGAAGAGTAACTGGGTTGACTCCAGGTGGTGTAAATCCATCTGAAATCTGCGAATGAGACACAGGGACTGCTAAAAAACTTGCATGGAGTGATGGAACAGGAAGGGAATCAAATCTGAATTGTGAAAAGGTGCCATTTTCTGGcatttacagtacagtgacagtccCTCCTGCCACACAGAGGTGTTGTAACACTTAAGATCCGTCCTATTGATCTGGAGTGCAGACCCCCGGGTTTGGGCGACACATATAGGCGCCGGGAGATGTTTTGAGCAGGGGGGTGCGGCCCACGtcattgacatttttaattattagctGCTTTATCAATTTGTTCGTTAATGGAGGAGCTTAACAATAGATAGTCGTATAACACACATACCCCACCCACCCACTTTAGCACTACACAAACCTGTCTGTGAGAAGAGTTTTATAGTTAGCCGACACATGACCCACAGGCGCcaactccacacacacacacgggacACAACCAAAAATGTATCTTTCGCTTCCACAATACACAGCACTATAGGCTGACCCATAACTCCACGTTACGCACTGAATTACATCCAATCTGCACTTGCTCCACCGACACAAACGTAAAAGACGGCTAACGTATTGACCACGGCTACACTTGACCCTGTCTATTCTACCAAaggattgaaagaaaaaaagaaacgtcttacctacaactactactaagcCCCAAACGTGTACTGAGTAACCGCCTGCTGAGGGGACGACTATCCGATCTGCCCAGTGTCACTGCGTCAACCGCCTCTGTCCTCTGATTCTGCGATGTTATTTTAGTCGTTATTGAAGTTGTTGATGCtctcccattattattattttttttttagtagaaCTTTTAGAGAATAAAAGTCTGACTTTCGCTTCCGGCTATTTCCCAATTTTGTACGTCAACTGTGCCCTCGTGCTCCCGCATGCCAGGAACCAcggcgctgattggctgttgttaAAACGAAGAGGCTGCGTATTGTCTTCCCTCAACCAATCACAATAAACTATTGTTCTGCCCGCCCTTTTCCCTGCCGTTTCAACCAATGACGGCAGTCTTAGCGTCAgcaatgtatttacaaaaatcgTCCGCATCACTGCGTAAAGCACCAGCAGGGGGAGTTGCAGCACCCTCAGCACCCCCCGCCTATGGTGACACAAACTGTAATGTTAATAACTGTCATGCAGCATCTTCTGCATACATGCATACCAAACTGGAGTGCAGCgagaatttaaaatacaattcaattttgTCTAGAGGTATTTAGCTCCAACCGTTATCAATCACAAATATGATACATACaagaacaaatatgtaatgCCTTGTATCCTGTtataaaatccaaaataaagaaattgcaAATTTAGTGCAAAGGTATTGTGTTCTGAAGGAGACCAAGTCTGCACTGTGTGTTACATATCCTAGAGATGCTGCCTTCCGCAAAGCCACAACATGCAACTGTGAGTATCAGGTGGGTGCAGAGGTTCAAGGCTTTTACAGTAAAACAGACTGAGATCAACGGTAAATATTGCATGAAGGGTCTGAAGAAACAGCTGGCTTCTCATTACTAAGGCCAGTATTCACTTGCACTCCCAGACAGTTCTGTCTGCTATTCTGTCTGCACTCATCTCCACAAAGccgtacaaaaaaaaaagaaggaagtGCCGACAGAAAGCAAAggtcaaaataaaagtaaaagaaacagaaataaacattattttttggaTGTGTCGTTTTagaggaagaaaaagcaaaccaCAGTGAAGAATGTTTACAGACCCTCCTGCCTTTCAGGGAATCACCCTTTGATTCATGCGGATACGGTTAGTACCTGGGTAGTGTGGATCTGCGTGTATCACGTATGTAAAGGGTACGCAGAACCTGTGGGTGTCGATTACCATGAGACGAAGAACTACTGGGTCATATTTTCAAGTATTAATGCATCTCTTGTTTCAGATGGTTTGAAAATTCCCAGCTTAATTCTGTTGCAAAATGATTAGGCTGCATGCTCAATtcatcttgaaatcatttataGACTAGTTACATTTTTCACCACACCTCAAATTCAGACATTTGACAAGTTGATCGCATAACTTTTCATATATGTACATTCCTTAGTAGTAACACTATTAGCAACGGGGGTGTCACACTTTAgttaacaatataatatatatatctatatatatatatatatatatataattgtgtagaATGTGTTGTTACAATCAACACATTACTAATCAGGATCACTGTGCTTTGcagcctttaaaaacaaacttccaaCTCCTATCTGTAAAGAGTTTCAGATGTGTAGCTGCTGGAGCAAGAACAAGTTTCAGATCTTAAATGTGAAAGTACAACAAACTCAGTTTCCCATTTTGTATCAGGTCAGCTCAACACATAGCTGTATCCGTCTGCATACTAATGTTACAAGCAGCCACTAGCGTCCTGCATTCTAGTCAGATTGGAAATCTAGGTCTCCTTTCAGCAGAGCCAGGAATTGAGCCATAACGGCCAGCGGCACGGCTACACTGATCCAGGACGACAAAGGTCAGCACTACTGTAGTCATTTCATGTTGCCCATTGTGTGACAGAGAAGCAGGAGGCTCAAGATAGAGGCGCATGCAGCCATTTAATGAGAATGGCCCATGATGGCAGCAATGCTATAAATAACTGCAGTGTTACACAGGAAGCTGAGTCATACAATatgtaaagaatacaaaaaaaaggtttctgaaGGGGTTGTAGGTAAAGAAGAAAGAACTGAGGTAAAGCAAAAGCAAAccaaagtaaaaacaacatttcaaaataatgcagaatataaatattttctccTTGCATCACAACCAGCCTGCAGTCCAGTTATAAGTATGAATAGGAAACCGCCTTAGAAAAGTGTGAGGGACTGCAGCagaaacgtgtgtgtgtgtgtgtatatatatatatatatacacaaatccTAAATAATTGCTTAACTAAATTCCCCTTAAAAGATTATGAAAACTTTCTTGGTTTAAAAGAACAGCGGATGAACGCGGTTAGTTTCTGTGAAGAGAACATGCTTCTCTGATACAGATGTCCCAGTGGAAGGTGTCAGCACCCTCccaccagacagacagacagacagggacacagacagGCAGCTGGCGGGGTCAGCTCCAGGTGCACTGCCTGCAAGCTGCCCGGCAGGGAGTTTGAAGCACCGCAGTGTGTTCACGCTGCTAAGGCCGTCTGcagttcctcctccccgccttTAGGTGTCCTCCTCTTGGGCAGCGGGGGTTCTCTTGCGCAGGGCCTCGGGGGAGCTCTCCAGCTGGGcgtccagcctctctctccgGGGCGCCGgctctctctggctctgtgcTTGCCTCTGCTCCGCCTCCCGGGATCTGTGCTGGGCTCTCCTCCGCCACAGCTCCCGACCGCCGTCGTCCTCGAACTCATCCTCGTCCTCCTCGTCCTCTTCTCCGTCAGCCTCCTGCTCATCCTCCATCCTCTTCCTCAGTCGGGCCTGCTCCAGGGCCTGCTTTTCTGAAACACAGCCGCCCAGATGACATCACTCAATACAGCAGCCAATCAGGACTCAAAAGAGCCAGCGCCTCTATATATCCAATCGATCTGCAGCATATGAACCCAGATTCaaataacacaatgacatgtatAGCTCTAATTTATACCCCCAACAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187686 lncRNA upstream 263912 9013371 ~ 9016151 (+) True G149172
TU187556 lncRNA upstream 606277 8668980 ~ 8673786 (+) True G149059
TU187553 lncRNA upstream 695096 8584488 ~ 8584967 (+) True G149056
TU187552 lncRNA upstream 696056 8583648 ~ 8584007 (+) True G149055
TU187549 lncRNA upstream 704939 8572936 ~ 8575124 (+) True AMCG00000251
TU187853 lncRNA downstream 198208 9483359 ~ 9486681 (+) False AMCG00000285
TU187903 lncRNA downstream 229671 9514822 ~ 9515600 (+) False AMCG00000286
TU187924 lncRNA downstream 276406 9561557 ~ 9573564 (+) False AMCG00000281
TU187938 lncRNA downstream 434796 9719947 ~ 9776988 (+) True G149359
TU188022 lncRNA downstream 672562 9957713 ~ 9962571 (+) True G149416
AMCG00000271 mRNA upstream 123121 9121065 ~ 9156942 (+) True AMCG00000271
AMCG00000266 mRNA upstream 200104 9035625 ~ 9079959 (+) True AMCG00000266
AMCG00000259 mRNA upstream 255336 9018662 ~ 9024727 (+) True AMCG00000259
AMCG00000258 mRNA upstream 275549 8997132 ~ 9004514 (+) True AMCG00000258
AMCG00000255 mRNA upstream 334474 8924397 ~ 8945589 (+) True AMCG00000255
AMCG00000273 mRNA downstream 46385 9331536 ~ 9355148 (+) True AMCG00000273
AMCG00000274 mRNA downstream 70830 9355981 ~ 9363434 (+) True AMCG00000274
AMCG00000278 mRNA downstream 93412 9378563 ~ 9412332 (+) True AMCG00000278
AMCG00000277 mRNA downstream 129526 9414677 ~ 9427542 (+) True AMCG00000277
AMCG00000285 mRNA downstream 154910 9440061 ~ 9486689 (+) True AMCG00000285
TU187550 other upstream 698951 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 1917356 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 1917356 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 1983399 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 684173 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 1249439 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2697309 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 3394519 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 4405688 13690839 ~ 13692589 (+) True G150069

Expression Profile