RNA id: AMCG00001511


Basic Information

Item Value
RNA id AMCG00001511
length 747
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00001511
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6381967 ~ 6383208 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAACAGCAaccaacatttatattttcaacctcgccttggcagacgccctcatCACGAGTACTCTGCCATTCCAGAGTGTGAATTATCTTATGGGGACCTGGCCGTTCGGTGATGTGTTGTGCAAGATCGTGATGTCTATCGACTACTACAACATGTTCACCAGCATCTTCACCCTGACCACTATGAGCATTGACCGCTACATAGCCGTGTCTCCAGAAGTCATAGACTGTACCCTGAAGTTCCCCCACCCTTCCTGGTACTGGGAGAACCTTCTGAAGATCTGCGTGTTCATCTTTGCCTTCATCATGCCAGTGCTCATCATCACAGTGTGCTATGGCCTGATGATCCTGAGATTGAAGAGCGTCCGTATGCTGTCCGGCTCCAAAGAGAAAGACCGCAACCTCCGGCGCATCACCCGAATGGTGCTGGTTGTGGTGGCCGTGTTCATTGTCTGTTGGACCCCCATCCACATCTATGTCATCATCAAAGCCCTGATCACCGTCCCCAGCTCACTGGTGCTGTCCGTCACCTGGCACTTCTGCATCGCCCTGGGCTATACCAACAGCTGCCTCAACCCGGTCCTCTACGCCTTCCTGGATGAGAACTTCAAGAGGTGTTTCCGAGAGTTCTGCATCCCCACCTCCTCCGTGCTGGAGACGCAGAACTCCACCCACGCCCGCAACCCCCACCGCGAGCGCAACTCCAGTGCTCACACCGTGGAGAGGTCGAACCACCAGGTATGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004979 beta-endorphin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199234 lncRNA upstream 489721 5892046 ~ 5892246 (+) True G158230
TU199182 lncRNA upstream 647408 5708092 ~ 5734559 (+) True G158184
TU199168 lncRNA upstream 759291 5593680 ~ 5622676 (+) False AMCG00001486
TU199086 lncRNA upstream 958875 5421471 ~ 5423092 (+) True G158104
TU199073 lncRNA upstream 1014898 5366005 ~ 5367069 (+) False AMCG00001480
TU199346 lncRNA downstream 13712 6396920 ~ 6398188 (+) True G158332
TU199355 lncRNA downstream 25813 6409021 ~ 6410557 (+) True G158337
TU199361 lncRNA downstream 38792 6422000 ~ 6422235 (+) True G158342
TU199387 lncRNA downstream 126086 6509294 ~ 6509630 (+) True G158364
TU199470 lncRNA downstream 404196 6787404 ~ 6788972 (+) True G158435
AMCG00001510 mRNA upstream 128746 6225995 ~ 6253221 (+) True AMCG00001510
AMCG00001501 mRNA upstream 183716 6194262 ~ 6198251 (+) True AMCG00001501
AMCG00001500 mRNA upstream 189995 6185200 ~ 6191972 (+) True AMCG00001500
AMCG00001497 mRNA upstream 295627 6085600 ~ 6086340 (+) True AMCG00001497
AMCG00001498 mRNA upstream 380340 5990262 ~ 6001627 (+) True AMCG00001498
AMCG00001509 mRNA downstream 11796 6395004 ~ 6395264 (+) False AMCG00001509
AMCG00001512 mRNA downstream 158465 6541673 ~ 6545924 (+) True AMCG00001512
AMCG00001507 mRNA downstream 180600 6563808 ~ 6591290 (+) True AMCG00001507
AMCG00001515 mRNA downstream 352889 6736097 ~ 6741940 (+) True AMCG00001515
AMCG00001517 mRNA downstream 360497 6743705 ~ 6752893 (+) True AMCG00001517
TU199235 other upstream 480969 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 510817 5870719 ~ 5871150 (+) False AMCG00001489
TU199165 other upstream 759291 5597257 ~ 5622676 (+) True AMCG00001486
TU199079 other upstream 998903 5381690 ~ 5383064 (+) True AMCG00001480
TU198750 other upstream 2319677 4052997 ~ 4062290 (+) False AMCG00001430
TU199345 other downstream 10895 6394103 ~ 6395960 (+) True AMCG00001509
TU199525 other downstream 491560 6874768 ~ 6876578 (+) True G158478
TU199601 other downstream 640180 7023388 ~ 7028141 (+) True G158537
TU199730 other downstream 1288106 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 1288106 7671314 ~ 7679783 (+) False AMCG00001550

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011792 True 1378 mRNA 0.50 3 NC_007124.7 23843712 ~ 23882977 (+)
grasscarp (Ctenopharyngodon idella) TU87216 True 1516 lncRNA 0.41 2 CI01000012 12960916 ~ 12962457 (+)