RNA id: TU87216


Basic Information

Item Value
RNA id TU87216
length 1516
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G76441
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12960916 ~ 12962457 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTGAATGATTTATTTATAATGCTGCATATATAAAAACTTACAGAAACACCAGCACACAGATCTTCAAGGTATTTTAGAGCATAAAACATTTTCTTTTTTCAGACAGAATGTCTTAATGTGAGTGACAATCAGACAATTACATTGGACATTTACATTAGTAAAAGAGATTTGCATCAGAGTACAAGCACAATACATTTGTCACCACCAAAGCATGAAAATTATCCATTGTTGCAAGAGGCGTTTTTTTTTATTTTTTTTATTGTTTTCAGCTTTTATATGAAGTAAATCAGAGAAACAGTGCGCACGTCACTTCCAGCAGTCATTTGATGATTAATTTCAATCACTCCAAAGGAATATAATTGAATAAGACAGCTTAACCAAATTGCTTTGTTGTCCATGAAAGTGGGTTAAAAATGAAATATGATTTAAGGGAAAGACACTGAATGCTGAACATTTTGAAAAAAACATCATTTTATGTTACATAATTTACATTTTCTGTCAGTATAAGTGAATACATACTTCTTTCTACAAATAAAGCAATGTTATCACTTATAAAATAATTATACTTATAGAATTTTAAGTAACATTTAAATGTTAAAGGGGATTTAAGATGCAACTATAAGAGAATATATATATATATATATATATATATATAGTTCTTGAATGTTGTAACCTAACAGATACACCAGATGTATGACTGTGAACATCACAGATAGTGAAACAAGCTCAGCTTATTGGGATCATTTGGGGTCAATAGTATATATCATATTTCACACTGAAATCTACTTTAACAGTCTTTCTCCGTACCAAAATTTTGAAACGGCTCTTTAGGGGAGGCCTAGCAAGATGCTTGAAAAGGTTCAACCTACCGCAACTCCTATAGATGAAGGTGTTAGACGCCTGTGGTGACCTGCGTGACCTCCGAACTCATGTCAACACTGGGTTGGCAGCGGGACTCCAGTGATGACATCTCCAGGACTAGTCATACCTGCTGATTTGTCCTGTCAACCGTGTTGCCGCTGGACTGGCCCTCACGCTGGGGGTTCCTGGTGCGAGTGGAGTTCTGCAGGTCCAGCACGGAGGGACTGGGAACACAGAACTCCCGGAAACAGCGCTTGAAGTTCTCATCCAGGAAGGCGTAGAGCACCGGATTGAGGCAGCTGTTGGTGTAGCCGAGGGCGATGCAGAAATGCCAGGTGACGGTCTGCAGGAGTGAGCTGGGAATGGTCACCAGAGCCTTGATGATCACAAAGATGTGGATCGGCGTCCAGCAGATGATGAAAACCGCCACCACCACCAGGACCATGCGGGTGATGCGCCGTAGGTTGCGGTCCTTCTCCTTAGAGCCAGACAACATGCGCACGCTCTTCAGGCGGAGGATCATCAAGCCGTAACAGACGGTTATGATGAGGACGGGCATGATGAAGGCAAAGATGAAGACGCAGATCTTCAGGAGGTTCTCCCAGTACCAGGGAGGGTGAGGAAAGAGCAAAGTGCAGTCAATGACTGTAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87209 lncRNA upstream 3619 12956940 ~ 12957297 (+) True G76440
TU87206 lncRNA upstream 4840 12955753 ~ 12956076 (+) True G76438
TU87204 lncRNA upstream 5282 12954448 ~ 12955634 (+) True G76437
TU87202 lncRNA upstream 7151 12953566 ~ 12953765 (+) True G76436
TU87200 lncRNA upstream 51409 12908999 ~ 12909507 (+) True G76434
TU87219 lncRNA downstream 1438 12963895 ~ 12964247 (+) True G76443
TU87220 lncRNA downstream 2502 12964959 ~ 12965257 (+) True G76444
TU87221 lncRNA downstream 5656 12968113 ~ 12968381 (+) True G76445
TU87222 lncRNA downstream 6517 12968974 ~ 12969187 (+) True G76446
TU87223 lncRNA downstream 7645 12970102 ~ 12970326 (+) True G76447
CI01000012_12930929_12947409.mRNA mRNA upstream 13507 12930929 ~ 12947409 (+) True CI01000012_12930929_12947409
CI01000012_12892163_12901139.mRNA mRNA upstream 59201 12892163 ~ 12901715 (+) True CI01000012_12892163_12901139
CI01000012_12832011_12865894.mRNA mRNA upstream 95022 12832011 ~ 12865894 (+) True CI01000012_12832011_12865894
CI01000012_12761469_12776431.mRNA mRNA upstream 184446 12761469 ~ 12776470 (+) True CI01000012_12761469_12776431
CI01000012_12733327_12736780.mRNA mRNA upstream 223647 12733327 ~ 12737269 (+) True CI01000012_12733327_12736780
CI01000012_13029637_13033226.mRNA mRNA downstream 66978 13029435 ~ 13033725 (+) False CI01000012_13029637_13033226
CI01000012_13063943_13081607.mRNA mRNA downstream 100386 13062843 ~ 13082567 (+) True CI01000012_13063943_13081607
CI01000012_13102619_13168566.mRNA mRNA downstream 140162 13102619 ~ 13168566 (+) True CI01000012_13102619_13168566
CI01000012_13291350_13311094.mRNA mRNA downstream 328893 13291350 ~ 13312156 (+) True CI01000012_13291350_13311094
CI01000012_13391082_13401374.mRNA mRNA downstream 428625 13391082 ~ 13401692 (+) True CI01000012_13391082_13401374
TU87131 other upstream 211747 12745531 ~ 12749169 (+) False G76374
TU87145 other upstream 285250 12630755 ~ 12675666 (+) True G76385
TU86153 other upstream 1815177 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 2736629 10221955 ~ 10222037 (+) True G75291
TU83911 other upstream 4593289 8367077 ~ 8367627 (+) True G73578
TU87240 other downstream 53049 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 689402 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 741030 13703487 ~ 13718704 (+) False G76656

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00001511 True 747 mRNA 0.54 2 CM030143.1 6381967 ~ 6383208 (+)