RNA id: TU87209


Basic Information

Item Value
RNA id TU87209
length 358
lncRNA type antisense_over
GC content 0.31
exon number 1
gene id G76440
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12956940 ~ 12957297 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAACATTTGAACTTCTCAATGCTGCGACTGACCAGTCAGAATCAAATGTTCCAAATCATAATAAATGGTTATAATTGTTTTTTGAAGGAAATATGCTGATTTTGTTTGTATAATGATGATAAAGAAACTGCGGATTTACTGCACTGATTTTGACTACATTAAAAAACAAAGACTTTGTTATGTTCAGTGAGGGTGTGATGGTCACATCACACAGATGGTTTGTTGGCAAGGAAATTTTTTCATAAAGCAGATCTCATTTCATATTTTAATGTTAAAAAAAATGTATGTGTGAGTCATCAAAAATGGAATCATCCACTTGATTGGGTTCTGTTTGGTCTCATTAATGTAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87206 lncRNA upstream 864 12955753 ~ 12956076 (+) True G76438
TU87204 lncRNA upstream 1306 12954448 ~ 12955634 (+) True G76437
TU87202 lncRNA upstream 3175 12953566 ~ 12953765 (+) True G76436
TU87200 lncRNA upstream 47433 12908999 ~ 12909507 (+) True G76434
TU87127 lncRNA upstream 53651 12902086 ~ 12903289 (+) True G76372
TU87212 lncRNA downstream 3619 12960916 ~ 12962457 (+) False G76441
TU87216 lncRNA downstream 3619 12960916 ~ 12962457 (+) True G76441
TU87219 lncRNA downstream 6598 12963895 ~ 12964247 (+) True G76443
TU87220 lncRNA downstream 7662 12964959 ~ 12965257 (+) True G76444
TU87221 lncRNA downstream 10816 12968113 ~ 12968381 (+) True G76445
CI01000012_12930929_12947409.mRNA mRNA upstream 9531 12930929 ~ 12947409 (+) True CI01000012_12930929_12947409
CI01000012_12892163_12901139.mRNA mRNA upstream 55225 12892163 ~ 12901715 (+) True CI01000012_12892163_12901139
CI01000012_12832011_12865894.mRNA mRNA upstream 91046 12832011 ~ 12865894 (+) True CI01000012_12832011_12865894
CI01000012_12761469_12776431.mRNA mRNA upstream 180470 12761469 ~ 12776470 (+) True CI01000012_12761469_12776431
CI01000012_12733327_12736780.mRNA mRNA upstream 219671 12733327 ~ 12737269 (+) True CI01000012_12733327_12736780
CI01000012_13029637_13033226.mRNA mRNA downstream 72138 13029435 ~ 13033725 (+) False CI01000012_13029637_13033226
CI01000012_13063943_13081607.mRNA mRNA downstream 105546 13062843 ~ 13082567 (+) True CI01000012_13063943_13081607
CI01000012_13102619_13168566.mRNA mRNA downstream 145322 13102619 ~ 13168566 (+) True CI01000012_13102619_13168566
CI01000012_13291350_13311094.mRNA mRNA downstream 334053 13291350 ~ 13312156 (+) True CI01000012_13291350_13311094
CI01000012_13391082_13401374.mRNA mRNA downstream 433785 13391082 ~ 13401692 (+) True CI01000012_13391082_13401374
TU87131 other upstream 207771 12745531 ~ 12749169 (+) False G76374
TU87145 other upstream 281274 12630755 ~ 12675666 (+) True G76385
TU86153 other upstream 1811201 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 2732653 10221955 ~ 10222037 (+) True G75291
TU83911 other upstream 4589313 8367077 ~ 8367627 (+) True G73578
TU87240 other downstream 58209 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 694562 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 746190 13703487 ~ 13718704 (+) False G76656

Expression Profile