RNA id: TU87202


Basic Information

Item Value
RNA id TU87202
length 200
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G76436
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12953566 ~ 12953765 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGCCAGCTGGCGAGGATTTGCCCTGCTATGCTGGTGGCAACCGCTGACTGTCACGCTCGAAGACTGCAAATCTCTTATCAGCGAAGTCATGGTGATGCCAAATTTCCTCTGCGCTGATTCATCGGACACACATTGGAAAAATCCACTCCTTATTCAATTGATTTACTTGTAAATGGGCAATATACCAGCAAATCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87200 lncRNA upstream 44059 12908999 ~ 12909507 (+) True G76434
TU87127 lncRNA upstream 50277 12902086 ~ 12903289 (+) True G76372
TU87132 lncRNA upstream 204524 12746761 ~ 12749042 (+) True G76374
TU87185 lncRNA upstream 235563 12717772 ~ 12718003 (+) True G76419
TU87184 lncRNA upstream 235894 12717464 ~ 12717672 (+) True G76418
TU87204 lncRNA downstream 683 12954448 ~ 12955634 (+) True G76437
TU87206 lncRNA downstream 1988 12955753 ~ 12956076 (+) True G76438
TU87209 lncRNA downstream 3175 12956940 ~ 12957297 (+) True G76440
TU87212 lncRNA downstream 7151 12960916 ~ 12962457 (+) False G76441
TU87216 lncRNA downstream 7151 12960916 ~ 12962457 (+) True G76441
CI01000012_12930929_12947409.mRNA mRNA upstream 6157 12930929 ~ 12947409 (+) True CI01000012_12930929_12947409
CI01000012_12892163_12901139.mRNA mRNA upstream 51851 12892163 ~ 12901715 (+) True CI01000012_12892163_12901139
CI01000012_12832011_12865894.mRNA mRNA upstream 87672 12832011 ~ 12865894 (+) True CI01000012_12832011_12865894
CI01000012_12761469_12776431.mRNA mRNA upstream 177096 12761469 ~ 12776470 (+) True CI01000012_12761469_12776431
CI01000012_12733327_12736780.mRNA mRNA upstream 216297 12733327 ~ 12737269 (+) True CI01000012_12733327_12736780
CI01000012_13029637_13033226.mRNA mRNA downstream 75670 13029435 ~ 13033725 (+) False CI01000012_13029637_13033226
CI01000012_13063943_13081607.mRNA mRNA downstream 109078 13062843 ~ 13082567 (+) True CI01000012_13063943_13081607
CI01000012_13102619_13168566.mRNA mRNA downstream 148854 13102619 ~ 13168566 (+) True CI01000012_13102619_13168566
CI01000012_13291350_13311094.mRNA mRNA downstream 337585 13291350 ~ 13312156 (+) True CI01000012_13291350_13311094
CI01000012_13391082_13401374.mRNA mRNA downstream 437317 13391082 ~ 13401692 (+) True CI01000012_13391082_13401374
TU87131 other upstream 204397 12745531 ~ 12749169 (+) False G76374
TU87145 other upstream 277900 12630755 ~ 12675666 (+) True G76385
TU86153 other upstream 1807827 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 2729279 10221955 ~ 10222037 (+) True G75291
TU83911 other upstream 4585939 8367077 ~ 8367627 (+) True G73578
TU87240 other downstream 61741 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 698094 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 749722 13703487 ~ 13718704 (+) False G76656

Expression Profile