RNA id: AMCG00001708


Basic Information

Item Value
RNA id AMCG00001708
length 3468
RNA type mRNA
GC content 0.53
exon number 34
gene id AMCG00001708
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12984899 ~ 13011789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCCATTTTCCGTGGGCGCAGTTCAGAGGCGGGTGTGTTCTCAGTTAAAGATCGGAGAAGATGATTTACCAGGGTTTGACATTATTTCACAGTTTCAGCTAGGCGCGGTGACAACCAGAGGCACTGCCCAAAACGTGGCCGGGTCAACGCCAATGCAAACTGCATACAAAGTAGGACCGGACTACAATTTCAAGATTCAAACAAGGTCCGCCTATCCTCTTGGGCTACCGGAGGAGTTTTCTTTTCTCACGACTTTCCGGATGACTGGGAGCACAGTGGACAAGAACTGGAATATCTGGCAGATTGTGGATTCAACTGGCACTGAGCAAATGGCAGTGAGGCTCAACGGGGACACCCAGTCTTTGGATTTCTCCTGCACCACGACGGACAACAGACCCCAGTCCGCCGTTTTTTCCTTTCTGCCATTCCTGTTTGACTCCCAGTGGCACAAGGTCTTGCTCAGCGTGGAGAAGGGGGTCGTGACTCTTTTTGTTGACTGCATTAGGATTGACTCCCAGAATATTCTCCCCAGAGGCGCCGTGAGTCTCGATGGCTTTTCAATGATTGGGAAATTAAAGGATAACCCTGCCATGGCAGTAACAGTGAGTCTACTTCACTTACTTCATATTCAGTTCATAGAGACCCGCAGATTTCGACAGAAAGGTGGGAAATATCACATAGAGtttgaACTTCAGTGGATGCTGATTCACTGTGATCCCAAACGCCCCCACAGGGAATCTTGCAATGAACTTCCAGCCAGAAGATCGAAAAAGGACGGATTGCCTCTTCTAGCCATTGGGGAGACCATGGCTAGTGCCACAAGCAGTCGGGGGCCACTTCTTTTGGTTTTCCTGCAGATTGTCTTCATTTGCTCGGCTCAAAGAGGCCCAGTTGGCCCCCGAGGTCCAACGGGCCCCCCAGGTCCTGCCGGGGTCCCTGGAGTTGATGGCATAGATGGAGACAGAGGTCCTGATGGCTCAGATGGACCCCCGGGCCCAGATGGGGATGCAGGTAAACCTGGTTCTGCAGGATTGCCAGGAATGCCAGGAGCTGATGGATTAACTGGACCTGATGGGGATGCTGGCCCAGATGGTCCACTGGGACAAAAAGGTGAACCAGGGAAAGTTGGGCCCCGTGGAGCAGCCGGTTCAGGGCCAGATGGACCACCTGGACCACCTGGTCCAGGGGGACTTCCTGGTGAACTGGGACTTGTTGGACCCCTTGGTGACATTGGAGTGAGAGGGCCTGCAGGGCCCCCTGGACCCCCTGGACCACGAGGCGCTGCTGGGATCCATGACAGCACTGCAGAGCTGTGTCCCAATTCCTGTCCCTCTGGTGCTTCGGGCCATCCTGGTCTTCCAGGTATGAAGGGCCACAAAGGTGTCAAAGGCGAATCCGGTGAGCCAGGAAAGCAAGGACACAagGGGGAAGAAGGAGACCAGGGAGCCACTGGGGAAGTTGGCGCTCAAGGCCCaattGGTCCCCAGGGAATAAGAGGAATCACTGGAATGATGGGGTCAAAGGGTGAAAGGGGGCCCCGCGGACACGACGGGGAGCCGGGCCCTCGGGGCATTCAAGGCGCCTTTGGTGACCAAGGTCAGAGAGGCGTGATGGGCGAGTCTGGGCCAAAAGGCAGTCAAGATCAAGGGGAATTTCAGGTCTTCCTGGTCCAAAAGGAGAACCTGGATTACCAGGAGTGGATGCCCGTGAAGGGATTCCTGGAATGCCAGGGGCAAAGGGCAACAGTGGGAAGCCGGGAGCTCCAGGAGAAGGCTTGCCTGGTAGTTATGGCCCGAAAGGAGTTGCTGGTGAGAAGGGTGAGAGAGGCGAGCAGGGTCCCCCAGGCGGCCCCGGATTCCCAGGACCCCGTggAGCAAAAGGTGACCTCGGTCTGCCAGGCCTCCCCGGTCCCCCAGGCTTGCCTGGAGTCAAAGGAGACAGGGGAGAAGCTGGCGCTGAGGGCACTCCGGGAGAAAAGGGAGACCAAGGTGATCAAGGGGAACCTGGAGCTAAAGGATCGACTGGCAATCCCGGGGAGCCTGGCAACCGAGGCCCAGAGGGAAGCCGTGGCCAGCCGGGTATTGAAGGACCCGCTGGCTCTCCGGGCCCCAGGGGAATGCAGGGAGATCGGGGCATGCCAGGCTTGCCAGGGTCTCAGGGCCCAGCGGGTAAAGAGCCAAAGCAGTTGGCTCAACTGGCAGCCAGTCTGCGTAGGCCTGAATCAGGAGCTGCTGGCCTGCCTGGCCGACCCGGGCCTCCTGGGCCTCCTGGTTCCCCTGGGGACAGTGGCTTCCCTGGACAAGCTGGATCTCGAGGGTTACCTGGGCTCAAGGGGCCTTCAGGACTCATTGGCCTCAAGGGACCCAAAGGTGAAACGGGCGACCGAGGAGAGAGAGGCGTCACAGTTCGAGGGCCTAAAGGCTTGCCTGGGGCTCCTGGTCTTCCCGGTGAGCCCGGCAGACCTGGTTATGGTCGCGACGGGcgtgatggagagagaggccCACCTGGCTTACCTGGACAACCTGGCGTTCCTGGTCCTCCTGGCCCCGCTGGCCCGAATGGCTATTGTGACCCATCAGCATGCAACTTGCAAGCCATCGCCTCACCACTGTCTGTGAAGGACTCCAACATGAAAGGACCTTGAGCTGGTCCTATGAGTCATCAGTAACTGCACATCTGCAGTAGGTCCAGGAGAACTGAAAGACAAATGGAGAAGTCTCCGAAGCAGACTTTATAAAGAGACAGacccttttttttaatgcaatggtgctcaatacattatttttttttctacctgcAACGTTTCTTCCCTTCTAAATGTGCCTTATAATTATAATGCCAATACCAAGAAAGGCCCCTCATTCCAGTATTCCAGTGGACAATGAATATTAAGATGCACCCAGTTATTAGTGAAACATCAACGAAGGAATAATGTCTTACCTCAGCTGTAGCTTTTGCCTTCTGTgtgtactgtaaaataaaattcccTAGAAGCAACCTGAATTCTTTCTAGACaaagtgcatttcattttgtcgCGTGTATGTACTATATTGTTAACTAAAGATGAACGTCAACCATAACAAGACTGAACAGCCTTAGCATTTTGTACAGAAATGACTGCCCATGTAAAAGAATCCAAAAACAGGCTACACTGAATACAATGCATACTGTAAATCTCTGTAAATGTGTGATTTCTGGATATTCATGCAATTATATTTCATGTGAAATTACTTTCATAAGGAtgagtgatttgtttttttttgccagttCTTCACTCAGCGACTCCTCAGATATGTTCCTTCTGTGTGGTGACAGCACAATGAGAAGGCAGTAAGCCACTTTTATTGGTCATGTTTAGGAAATATCCAGAAGTAAGTTTTATgatgatattatttattatatgaagGTCTAAGGTGACATCTAAGGTTGTACAAAAGcagaaacaataaatacaaattttaataaa

Function

GO: NA

KEGG:

id description
K08131 COL9A; collagen type IX alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201183 lncRNA upstream 108213 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA upstream 174164 12799509 ~ 12810735 (+) True G159800
TU201143 lncRNA upstream 305410 12676811 ~ 12679489 (+) True G159775
TU200938 lncRNA upstream 1337447 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 1545287 11436662 ~ 11439612 (+) True G159483
TU201465 lncRNA downstream 1255599 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1294236 14306025 ~ 14306260 (+) True G160036
TU201556 lncRNA downstream 1513948 14525737 ~ 14526508 (+) True G160107
TU201569 lncRNA downstream 1546977 14558766 ~ 14563369 (+) False G160116
TU201568 lncRNA downstream 1551065 14562854 ~ 14563369 (+) True G160116
AMCG00001699 mRNA upstream 132176 12844164 ~ 12852723 (+) True AMCG00001699
AMCG00001698 mRNA upstream 192068 12787082 ~ 12792831 (+) True AMCG00001698
AMCG00001695 mRNA upstream 458504 12521489 ~ 12526395 (+) True AMCG00001695
AMCG00001689 mRNA upstream 464194 12517012 ~ 12520705 (+) True AMCG00001689
AMCG00001688 mRNA upstream 469394 12508278 ~ 12515505 (+) True AMCG00001688
AMCG00001709 mRNA downstream 129308 13141097 ~ 13150256 (+) True AMCG00001709
AMCG00001718 mRNA downstream 580402 13592191 ~ 13602628 (+) True AMCG00001718
AMCG00001717 mRNA downstream 606505 13618294 ~ 13661682 (+) True AMCG00001717
AMCG00001723 mRNA downstream 649992 13661781 ~ 13667350 (+) True AMCG00001723
AMCG00001719 mRNA downstream 660792 13672581 ~ 13674756 (+) True AMCG00001719
TU201065 other upstream 653451 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 3070235 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4823084 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 5051344 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 5237919 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 1257826 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 2319831 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 2420548 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3225473 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 3357624 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile