RNA id: AMCG00002544


Basic Information

Item Value
RNA id AMCG00002544
length 3734
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00002544
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18482733 ~ 18492180 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCATCGAAAGCCCCAAGATTGTGGTTGAAGATGCGCTGCAAAAGGAGATCTGTGGTCGCATTCAGCTTTCTTTTTACTTTGTCTGTGGTCATGATAAATAGCTTTCCATCCTTCCCTGCCGAGAGCCACAGCCTGACGCAACTGGAGCTTCATGCAGAGACTGGCAGGCCAGAAGCAAACTTGAAGAAAAGAGCATCGGTGCCCTTACGTAGTCTACCTCTGAATCAAATCCACAGAAACTGGGAACCTGAAAGGAGGAAAGAGACGGCAAAGCACTTGGCAAACGAGAAGCCTGAACACCAGCCAAGCGTTAATAAGAAAAGCTTCCAAGAGAAGGATAAGAGGCCCTCCTTTTCTAATGGACGTCCTGTGAAAGATCACAAGAGTAATGCAACAGCCACAACAGCCAAGAGGAAAGCGAAGGGAAAGTCCGGGGGAATACGGCAATCCCAGGGATCATCGGTGCAGTCGAGGGGCAAGCCACGAAATGGCCACTTGCAAGAACAACAACATGGTCGGCATCCCCACCTTTCAATTCAAGTGCCACCTCCTAGTCGAGGTTTGCATGATACGTTCGCCGTCCAGAACCTTTCAGACAGCTTGCCATTGTTAAAGCACAAATGCATCCCAGATGCGCGGGACGATGCTGGCAGAGCAGGAAAGCTCATAAACCCCTCGTTGGCTGGCGGAAAGCCATCTTCTAAAGATATTAGGAAACATGAAAGGGAATCTGAGCCTCTGGATAGGAAGAGGCCCTACTTGTCAGGTCAGAGGAGAGATGGATGCAAAGGAGACGGATTTAAAGAGGCCAGGCAGAAGCTGACTACTTGGTACAGCAAACCGAAAGAAGGTGCTTTCTCGGACGAGGTGAAGGAGAGCATAAGAATTGGAAGTCATCCCCCACCTTGGTTCAGTCAGGATGACATCAGGAAGATGAAGTTACTTGCTGATGGTACTGTAGTTAGCAAGACCAGAGTCCCTGCCCATGGGCAAGTGCTCAAGATTGGACTCCGACAAAATGGTTCCCAAGCCCCTGGAGATGGTGAAAGACACTGCCTGGATGGTCTCTGTGCTTTGATCAAGCGTCCCGATGACTGGTTTGAAGTCTTTGCCTTCCATCTGGACAGGGTGTTGGGGTTGAATAGGAGTCTGCCTGTTGTGGCTAGGAGCTTGCGCAGTGATCTTCTCCCCTACAAGTTCACAAGCGGGACTGTGAGGCCCGTGGTCTGGTGGGACCCCGACATTCAGCACTTGGCCGATGACAACAACGACCAAAACTCCTTCCCCCTCTCGTGGCTGCAGTACCAGGATGTGCTGAGGAAGCAGTGCGGTGGTACAGATGCCACCAATTCAGGCCCTTGTGTGGGGGTGCGGCATTCTGAATGGGGGAAGCTGGCGTTATTTGATTTTCTGCTACAGGTCAATGATCGACTGGACCGTTACTGCTGTGGATTCAAGCCCGACCCGTCCGAATCCTGTGTGGATGATCTGCTTCATGCCAAGTGCAGAAATCCCAAGGAGCTCGTGCTGGTACACATTCTGGTGAGGAAGGCCGATCCCTCCCGGCTGGTGTTCATTGACAATGCTGGAAGACCTCTCCACCCCCATGACAACCTCAACTTCCGCCTGCTGGAGGGTATTGAGGAGTTTCCTGAGAGTGCGGTCTCCGTGCTCAGATCCGGGTGTCTGGAGAACATGCTGCTCCAGTCACTGTACACGGACAGGGAATTCTGGGAAAGCCGGGGGAAACTGAAGAGCTTGAAGCAACTCATTCACAATGTAGACAAAAGAGGCAAAATACTGCTTCAGTACATTCAGGACAGGAACTTGAAACTCAGTACAGAACTTTAAAATGGACATTGTGTACAACTACCTGAAACCAACtgcctttttccaagtgcaGTTTTTGGTTTGTGTCCATCTTCCCAAGACCTGATTTTTTGCTACAGAGATCAATATAAAGTATTCATATCATTGCAgtttgcacaatttaaaaagttttcttctcagttttaagaatttaaattgaatgttgatgtttttgtttctttaagggTTGGTTGAATGGCTACTCATACGAAATGATAGACACTGCATTCTATATACGtagttgtgtgtgcgtgtgcgtgtgtgtgtgcatgtgtgtgtgtgggtgtcagtGTTGGTGGGTGGCTGGGGAGTCTTAAGCCTACACCAGAAATGATGAAGCATTCGATTTCTGTGTTCCAGCCttgttgtgtattgtttatttgaaacaagAAAACCTACACACTGGCACTTACATCAGCAGCAGCTTAGAAAAGGCGACTGAGCAGTTGCTTATGTCCTCCCAATTTAAATGAGCAGAGgatcaatttaaaaagcataccAGCTGCTTGAGGTCAAAAGCTgggttattgtattttttgtatcataTTTTTTACAAGGCTTGGAGGCTTTCATGCagttcaaaatactttttttgagGAAATGTAGCTCTGTATGCAATGGTTTGGCTTTTgatcattttttccatttttgatAAAATTCTTGTGATTACTTAAAATGACCTACATTCCCCTTATCTGCTTAAATGATAGAGCCCATTCTAGCTTAGTTTACATAATGGCatagttttatagttttatatatatatatatatacgatgTAATTATGACTGGCTTTAATTCCGAGCAACGAAGCCAATGAAGTCTTTGAACCGAACAATAATGGCACCCTGTTGTTTTGCTAGTGGAAATTTAAAGAACCATCTGCAACAGTGTGTTGTTCTTGTCAATCACATCCCATTTAAATGAAAGTGCaagatgaattaaaaatgtatttttctttgaaaatgtatttgatatgtCAATACAAGTTTTAAGACCCCAGATccaccttttttgtttttaaggccTGTAACCAAAGATCCTATTTCATTGTGCATCTCATGTCAAGATAAATATTGCCAAGCATGCGAGTGAAAGAGAAAATCTGATCAAGCTTAACATAACTTCAGTATAACTTCCAAACTTCATCTCATCTCTATGCATTTTGCTGAAGGGGAGTATAAAGCTGCTTCTTGTAATTTACTGTTTACTCCCTACTGTGCAGAAAGGAACAGAAATACAGCCAAATAATACCTTAAAAAGGATATGCTCCTTGTAATCAAGAGATATATGCTTCTTCTGGCATTTTTTCATGTTCCAAGagttataaataatgcattatggCTTGTATCTTGGGGTGATTACAGATTCTGACACCACAGCAAGAAAATGCCCTAGTCTACTTCAAGACCGCGTTGCTCCCCCCTACTCTTTGAAGGTTAATGTGTGGCAAAACAAATGCACCGTGGTTTTCATGTAAACGAGAACTGCAAGCTGGGGTAGGGCTTTTAATTCAGTTTGCATGGGTGAGTCTTCACTGTCAGTTTATGTTCAAACCGattttgtttaggttttaaaatgtgtttatcaaGATATAGCCATATTGGTATTAGGTCAGCCAGGCCATTTGCATTTAATAAGGTGTTACCAAAAACTAGATGGACCATTTTGatattacacaaacaaacttcTGGAAAAGTATGACAATATCCTCATGCCCGGTGCATAGAGGAAAGCATATCTCCAATGATCAGCAATTTATTATGGTCAAAAATGTTGCTATCAGctatattatgtttaattatgattttgtatttcataaaatatGATGTCAGCCACTTTGGGTAGGGTTTTAATAAAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155370 lncRNA downstream 13126 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 276601 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 430401 18051097 ~ 18052332 (-) True G123845
TU155254 lncRNA downstream 487970 17933464 ~ 17994763 (-) True AMCG00002533
TU155242 lncRNA downstream 667267 17811518 ~ 17815466 (-) True G123824
TU155412 lncRNA upstream 92529 18584709 ~ 18585930 (-) True G123961
TU155446 lncRNA upstream 289965 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 791698 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 1809892 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 2048127 20540307 ~ 20540523 (-) True G124222
AMCG00002543 mRNA downstream 55395 18426724 ~ 18427338 (-) True AMCG00002543
AMCG00002541 mRNA downstream 93092 18383820 ~ 18389641 (-) True AMCG00002541
AMCG00002542 mRNA downstream 147608 18320139 ~ 18335125 (-) True AMCG00002542
AMCG00002538 mRNA downstream 241512 18226968 ~ 18241221 (-) True AMCG00002538
AMCG00002537 mRNA downstream 257883 18215795 ~ 18224850 (-) True AMCG00002537
AMCG00002545 mRNA upstream 12717 18504897 ~ 18508670 (-) True AMCG00002545
AMCG00002549 mRNA upstream 36473 18528653 ~ 18545075 (-) True AMCG00002549
AMCG00002550 mRNA upstream 62618 18554798 ~ 18572982 (-) True AMCG00002550
AMCG00002547 mRNA upstream 93898 18586078 ~ 18602108 (-) True AMCG00002547
AMCG00002552 mRNA upstream 137469 18629649 ~ 18632830 (-) True AMCG00002552
TU155250 other downstream 493268 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1643011 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3536422 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4828497 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 5453327 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 4593814 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4689741 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 5769385 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 5799607 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 7811702 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile