RNA id: AMCG00002548


Basic Information

Item Value
RNA id AMCG00002548
length 2752
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00002548
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18701895 ~ 18713091 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGTGCAGGGCAGCCGCTTGGACCACAAGACTGAACAAGACCTGGCTgagatggaggaggagacggTTTCCACGGGAAGCAGTGGAAGTCTCCCAGACAATGCCTACGCTGCCTCCGAGGGCACAGCCGAGGACTCGGGGGTAGTCAGCTCGCCCTCAGACATGGCGCACCCCGCCTCGCCTGACGACAGCCTGGTGATGGAGAGGCAGCTGTCCTTGGATCGAAGCTCCAGTGAAGCTGATGTCCAGAGTCAGTCCAACGCAGGCGGTGTCATATCCAAGGACTTCTCCAGCGACAGTGATGAGGGCTGTACCACCTGGATGTCTCATAGCAGACACAACAGTGATGTCTGTCCTGTGGAAACCCAGCCGGTCAAAAACACTGATCACTGTGCAGAAGACCTGGACCTCACAGCTCAGCTGCATCAGACCCTTGCTGACCTGGAAGCTGATTTAGCAGTCATAGAACATGCAGAAGTAGCCACAGATTCCTCTCCTGATCCCAGAGGACAAATTGACACATCCTGCCTGGGTGATATACCCATCTCAGATCTCGATATGACCGTGCCAGTGACAACTATAGATGAAGTCTGTGAGGATTACAGGTACAGCATGACTGACTATGCAATAGCTGTGTCACAACCAGAAAGGGAAATAAAGAGTGGAAGACGTTATCAAATAAACAGTGATCTAGAAAACAAGAATAACAACGCTGTCACATCTAACAAACAGCCTAACGCTGACAATAATGGGCAGATTCCCAGGAATGATTCGGAAGAAAAGTGGAGGCAAATTCCAGCGACAGGATTCCAATTCAGCACACAGAAGGAAAACGAGAAACAAAATATCCTTGGACTCGTGAAAAGTCCCAAGGCGGTTTCCAGAGTCCAGAAGTGTCCAAATGACCAGGCAGGAACTCCAAAACCACAGGCTGTAAACCAGACTGAACCGAAGGAACACGCTGAAGACGGCGAGTCTCTTACATCTGCTAGGTGGCAAACGGCCCAAAGTAAAATAACACAGAGCTATGTTTCACGACTTGGCATGAACACATTCACTGTGGTTCCACCCAAACCGGCTTACGATCAGATAAGAAAGCCAGGTGGGTCTCTGGTGACTGGCGCCATTAAGATTGATGCCCAGGGCAATCTCATCAATTCGAACGAAGCTGAGAACCAGCATAGAAGATTGTCTGGTTCTTGTAGCGACTCCAGGGAGACTCTTCTTGGGAAAgccaaggcattctggagctcAGCCGAGCAGCATGACCCCGACAACACCAGCAAGACTGTGGTCACAAAAGTCAAGTATCTGGGAGCCCCTAATCCAGAGCCATCAGTCCCATTCAGCAAAAAAGGACCTCCCGAAGAAGCAAAGTCAATAACAGTGATGGAAGTAAAGGGGGATCTGTCGAAAGATACGTCCCAAGGAAACAAGAACGAGCCTTTCAATCTTGTACCCACAAACCAGCCTGTGAAATCTATGTCGAAAGTAGAGTCTAGAAATGACCTTTCCTTTCTTAAACCGCCCAGAAGAACGTCTAGTCAGTACGTGGCTTCAGCTATCGCAAAATATACCGGGATGCCCACCACAAGGAGTGGTTCTGTAAAAGTGGACCTGGGAAGCACTCCAGCCAGCAGTGCAATATCACAGCCCTCCGTCTCTAAACCGTCCATTCCAACAAGGCAAGGTTTTTCAAATGCTGATAGATTCAGGCATGTAGAATCAAACACACAGCAATCTCAGGTTTCTACAGGCTTGTCTAAGACAGTAGAAGCCACCATGTTGGCTGCGAATCTAAGACAATCAATGAGCTCTCCAGATTATAATACAATGTCAAATTTCCCAATGACAACTGTTAAAGAAAGAGATTTTGCAGCAGAGCAAAATAAAAGCCTCAACTGCAAAACTGTTACTGTTGAAACTAACAGCGTGTCACCAGAAGCAAATGCAAAGATGAAACCCATTTCCTTTCAGCCATGCAAACCACCACCTCTTCAGCGACCAAGGGAAGAGGTGCAAACGCTAAGGTCTGCTCCTAAAGTCGAATCCGCTTTTGGTCGCTCCCTCCATGACCCTTCAACTGCACAGACCATCAAGAAAGATCTTCCTGAAGTAACAGGAAAATCAAACCTGCGGCTTCGATCAGCCCCAAGTACACCCACAGATTTCAATCCTCCAATCCCTGGCGGTATATTTGGTCCAGTCAAGAAGTTCAAGCCTGTTTCTCTGAAGCCATTACAGAATGAGGCCTCATTGCATACCTCACTAATGGAGGCCATCCAGGCAGGTGATGGGAAGCAAAGACTTAAAAAGACATCTGATACTACAAGAGAAAGCACTCTGAAGAATACGGTCTTTGTTGAAGCAGAAAATGAACGGTCAGCGCTCCTCTCTGCAATCAGAGCTCAAAATAACTCCTCAAGACTTAGGAAGACAAAATCATCAGCTGCTGAAGAGCTCAGagatatcaaaaatacagaGGAGACAAATGGTGGCCAGGACACTAAAGTAGTTCCTCCCTCAATGCCACCTCCCCTTCCTCCgtcttttcctcctcctcctcctcctcctccaccgtCAGCCAACTCTTCGAAAATGAAGCCCTCAAATGTAACGTTCAATGCCAATGGAAACCCAGAGCAGGCACGGGAAGCCCTGCTGGAGGCCATCCGCACCGGCAGTGGGGCGGCACGTCTGAAAAAGATCGCCAAGGCCTCCACGTGCCCAACCAACACTGAAGACGACACA

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155412 lncRNA downstream 115965 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 232288 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 495763 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 649563 18051097 ~ 18052332 (-) True G123845
TU155254 lncRNA downstream 707132 17933464 ~ 17994763 (-) True AMCG00002533
TU155446 lncRNA upstream 69054 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 570787 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 1588981 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1827216 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 2266006 20979097 ~ 21116735 (-) True G124327
AMCG00002552 mRNA downstream 69065 18629649 ~ 18632830 (-) True AMCG00002552
AMCG00002547 mRNA downstream 99787 18586078 ~ 18602108 (-) True AMCG00002547
AMCG00002550 mRNA downstream 128913 18554798 ~ 18572982 (-) True AMCG00002550
AMCG00002549 mRNA downstream 156820 18528653 ~ 18545075 (-) True AMCG00002549
AMCG00002545 mRNA downstream 193225 18504897 ~ 18508670 (-) True AMCG00002545
AMCG00002551 mRNA upstream 10306 18723397 ~ 18759586 (-) True AMCG00002551
AMCG00002557 mRNA upstream 73029 18786120 ~ 18786641 (-) True AMCG00002557
AMCG00002556 mRNA upstream 73582 18786673 ~ 18786954 (-) True AMCG00002556
AMCG00002555 mRNA upstream 158272 18871363 ~ 18895560 (-) True AMCG00002555
AMCG00002554 mRNA upstream 187182 18900273 ~ 18978957 (-) True AMCG00002554
TU155250 other downstream 712430 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1862173 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3755584 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 5047659 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 5672489 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 4372903 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4468830 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 5548474 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 5578696 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 7590791 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile