RNA id: AMCG00002569


Basic Information

Item Value
RNA id AMCG00002569
length 2265
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00002569
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19522852 ~ 19543805 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGATCAGGACACAGGACACTGACTATTTTCTGAAGCCTTTACCTCAGCATCTTGCAGTGGAAGCGAATTGCACAATCTCGGCCTGCCAGCAGCCGCATATCCTATACAAGAGATCCACGGACAGCAAGAGACCCCCCGCAGACAATGAAGTCATAATGGCTCAGAGACCTAAAGCCTTAGAGCACTACAGCGTTGGGCAACACCATCATAACGACTACAAACACGGAAGACGGCAAAAGCAGCACTTCTGTGGAAGGCGCAAGAAATACATGCCCAAACCGCCAGAGgaggacatttacattttgccagacgaatataaatatatatccagGAACAAGCGGGCAGTCATGTTCAAATCTCAGGGACGCCAGAAGCTGAATGTTGAGACACTCGTTGTAGTGGACAAGAAGATGATGGAAAATCATGGACAGGAAAATATAACGACGTATGTCCTAACAATACTGAATATGGTGTCAACCCTGTTCAAAGATGGCACCATAGGAGGAAACATCAATATCGTTATAGTTGGCCTAATTCTATTAGAGGACGATCAGGCCGGCCTGGTCATCAATCACCATGCCGACCACACTTTGAACAGCTTCTGTCAGTGGCAGTCGGGGCTCAATGGAACGGAAGGTGGCCGCCATGATCATGCCATCCTGTTGACCGGACTGGACATCTGCTCCTGGAAAAATGAGCCCTGCGACACTTTAGGTTTTGCACCAATCAGTGGGATGTGTAGTAAATACCGTAGCTGTACCATCAATGAAGACACCGGTCTGGGCCTGGCTTTCACTATTGCACATGAATCAGGACACAACTTTGGCATGGTGCACGACGGAGAAGGCAACGTTTGCAAGAAGTCTGAGGGCAACATCATGTCTCCTACACTTGCCGGCCACAATGGCATCTTTTCATGGTCCGCCTGTAGTCGACAATATCTCAACAGGTTTTTAAGCTCCGCTCAGTCCACCTGTCTAGCAGATGAGCCCAAGGCTGTGCAAGAGTACAAGTATCCGGAGAAGCTGCCAGGGGAGCTATACGATGCTGACACGCAGTGCAAGTGGCAGTTTGGAGAGAAAGCCAAGCTCTGCACGACATCTGTAAAGCTTTGTGGTGCCATCGGGTTGGCAGGAAATGCGAGACCAAGTTTATGCCAGCTGCGGAGGGCACAGGTTTGGTGTCGGCGTGGCCAGTGTGTGAAGCACGGAGATGAGGGCCCCAGGCCGGTGCACGGGCGTTGGTCAGAATGGTCGACCTGGACGGGGTGCTCCAGAAGTTGTGGAGCTGGGGTCACCTATCGGGAAAGACAGTGCACTAATCCAAGGCCGATGTATGGAGGGAAGTTCTGTGAAGGTTCTTCTCGTGCATACAAACTGTGCAATACTCAGAACTGCCCTCCCGGCAGCATTGATTTCCGGGCCCATCAGTGTGCTGAGTATAACGGCAAGCAGTTCAGAGGCTGGTACTACAACTGGAAGCCATATACCCGGGTTGAAGAACAGGATATGTGCAAACTGTATTGCTATGCAGAAGGCTTTGATTTTTTCTTCGCCCTTTCCAGTAAAGTTAAGGATGGGACTTTGTGCTCCCAGGACAGTTCCAATGTTTGTATTGATGGACTATGTGAGCAAGTTGGTTGTGACAAGGTTTTGGGTTCTACCGCAGCCCCGGATGCCTGTGGAGTCTGCAAGGGGAATAATTCGACGTGTAAAATATACAAAGGCCAATACAACAAGCAGCACTATGCAAATCAGTACTACACTGTTGTGACTATTCCAGCTGGAGCCAGAAGTATCCGCGTGAATGAATTGAACAGCTCCAATTCCTACCTGTCGGTTAGAAACTCCAACCAGAAGCACTACCTTAACGGACGTTGGACGGTGGACTGGCCAGGCAGACACACATTTGCTGGCACCATTTTCGATTACAAGAGGCCCTATAACCGTCCAGAAAGCCTCACCGCCACAGGTCCCACTAACGAGACTTTAGTAATTCAGATCCTCCTTCAAGGCAAAAATCCTGGTGTTCAGTGGGAATATACGCTTCGAAAGTCTGATATAGATAAGAAGATGAGCATAAAGCACAACTACACTTGGGCCATCGTCCGTTCCCAGTGCTCTGTGTCCTGTGGAGGAGGTCAAATGACTACCAAATCGGCATGCTACAGGGATTTGCGCGTGCAAGTGAACATCTCCTTCTGCAATCCCAGGTCTCGACCCTTCACGGGACTTGTTTCCTGTAATACACAGGCTTGCCCCCCC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08630 ADAMTS16; a disintegrin and metalloproteinase with thrombospondin motifs 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155557 lncRNA downstream 238559 19283878 ~ 19284293 (-) True G124068
TU155446 lncRNA downstream 740486 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 936922 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 1053245 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 1316720 18205668 ~ 18206132 (-) True G123876
TU155687 lncRNA upstream 758267 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 996502 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 1435292 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 2103250 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 2250968 21794773 ~ 21794988 (-) True G124402
AMCG00002568 mRNA downstream 29581 19481866 ~ 19493271 (-) True AMCG00002568
AMCG00002566 mRNA downstream 119229 19394342 ~ 19403623 (-) True AMCG00002566
AMCG00002567 mRNA downstream 156608 19362335 ~ 19366244 (-) True AMCG00002567
AMCG00002563 mRNA downstream 171079 19333911 ~ 19351773 (-) True AMCG00002563
AMCG00002558 mRNA downstream 264222 19248630 ~ 19258630 (-) True AMCG00002558
AMCG00002570 mRNA upstream 294579 19838384 ~ 19843617 (-) True AMCG00002570
AMCG00002579 mRNA upstream 725755 20269560 ~ 20274450 (-) True AMCG00002579
AMCG00002580 mRNA upstream 815752 20359557 ~ 20365199 (-) True AMCG00002580
AMCG00002578 mRNA upstream 961789 20505594 ~ 20512929 (-) True AMCG00002578
AMCG00002583 mRNA upstream 1583309 21127114 ~ 21128253 (-) True AMCG00002583
TU155250 other downstream 1533387 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 2683130 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 4576541 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 5868616 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 6493446 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 3542189 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 3638116 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 4717760 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 4747982 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 6760077 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000111_02480205_02574907.mRNA True 3486 mRNA 0.53 20 CI01000111 2480205 ~ 2574907 (+)