RNA id: TU157214


Basic Information

Item Value
RNA id TU157214
length 296
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G125434
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 27233424 ~ 27233719 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGATATAGAGGGACCGCAGACTGAAGTACTGTTTAAGAGACCGATGAGAATGAAAAGAATACAGAAAGCAGAGGATGGAGCTGCGATAAAAAATGCAGCATGGAGGGAGCTGGGCTGGCTCTGGGGGGAGGTTTACTACCTCCCACGGAGGTACCAAGCACCATTGAGAGCTCTGGACGTTGTAGTGAGGGAGCCACGGGGAGCGCCATCGAGGAGCTATACGGCACTAACAGTGACAGAGAGGTGGAGCTGACGGAACACAAGTAAGGAATTTCAAGGGGGGTATACTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157103 lncRNA upstream 409151 26821982 ~ 26824273 (+) True G125336
TU157078 lncRNA upstream 448814 26783782 ~ 26784610 (+) True G125320
TU157050 lncRNA upstream 570988 26661724 ~ 26662436 (+) True G125296
TU157044 lncRNA upstream 577967 26655239 ~ 26655457 (+) True G125290
TU157042 lncRNA upstream 578256 26653985 ~ 26655168 (+) True G125288
TU157216 lncRNA downstream 1648 27235367 ~ 27275905 (+) True G125436
TU157252 lncRNA downstream 107263 27340982 ~ 27343083 (+) True G125469
AMCG00002703 mRNA upstream 3892 27218462 ~ 27229532 (+) True AMCG00002703
AMCG00002710 mRNA upstream 286682 26945924 ~ 26946742 (+) True AMCG00002710
AMCG00002701 mRNA upstream 304956 26910718 ~ 26928468 (+) True AMCG00002701
AMCG00002702 mRNA upstream 344134 26877099 ~ 26889290 (+) True AMCG00002702
AMCG00002697 mRNA upstream 436648 26793575 ~ 26796776 (+) True AMCG00002697
AMCG00002699 mRNA downstream 49765 27283484 ~ 27285797 (+) True AMCG00002699
AMCG00002700 mRNA downstream 64646 27298365 ~ 27339159 (+) True AMCG00002700
TU156956 other upstream 863899 26362212 ~ 26369525 (+) True G125219
TU156924 other upstream 954451 26275591 ~ 26278973 (+) False AMCG00002684
TU156498 other upstream 2810811 24422252 ~ 24422613 (+) True G124863
TU156391 other upstream 3552039 23677935 ~ 23681385 (+) True G124769
TU156281 other upstream 3942889 23152648 ~ 23290535 (+) True G124689

Expression Profile