RNA id: TU157042


Basic Information

Item Value
RNA id TU157042
length 1184
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G125288
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26653985 ~ 26655168 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcatttttgaaaAGCTATTTTCTCAAAATAGAAAACTCAGGAGCCataaaaacatctttgaaaatcAGCAATTATGGGGTTATTTAATCCCTTCTCATGGCCCTAGCATGTAACTCCTGTTGTATCTGTAATTGATCCAGACATCAATACAATCCTGAATTAAGGGAACAATGCTGCACAGACTGATCAGGTAGAGCCTTTGCCAAGACACTGAGCAGAAACTCACATCAATGATGGCGGCTGCACTGCTGTCTAGGTGTTTGTAGAGATCATACAGCACCTCCCTCAGCTTCTTCATGGTCTTCTTATTGGGCTGCAGCAGCATGGCCTGAAAGTTCACTGGCAGCCCATACCTGTAAACAGAATAGCATTGCATGAGCAGAGTCCTAGCTGGGTCCCATAATGACTGAGATTACACTGCCTATAGCCCAAGGTTATAAAACTGTGTGAACACTGTGGGGTGCATCCATTCTAAACGTAATATTGGATGTCAAGAGTAAAAAGGGTTTTTAATTGTCAagacattttacacaaatatcCTTGTCCACGGTCTTACAGTTGCAGAGGAGGAAATTGaacttaaaaatattgaaatgttaatcCTTTCAGACACATTTTGAATACATAGTTACCAACTGGGATACAATTTGACTATTTTAATGatctttttaattatgatgattAATTTAGAATCAGATATTGACAGTCTAGCCATTAATGGTTTTTGCTTGTAACTgataccttttatttatttatacaccgatcagccataacattatgaccacctgcctaatattgtgtaggtcccccttttgccaccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttctttggccagcacatcccacagatgctggattggattgagatctggggaatttggaggccaagtcaataccttgaactcgtgattcatcagaccaggccaacaccttccattgctccgtggtccagttctgatgctcacgtggccattgtaggcgcttttggcagtggacaggggtcagcatggacaccctcactggtctgtggctatgcagccccatacgcgccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156958 lncRNA upstream 277860 26372579 ~ 26376125 (+) True G125220
TU156955 lncRNA upstream 286446 26362212 ~ 26367539 (+) False G125219
TU156957 lncRNA upstream 287553 26362212 ~ 26366432 (+) False G125219
TU156818 lncRNA upstream 791679 25854158 ~ 25862306 (+) True G125109
TU156701 lncRNA upstream 1197098 25456656 ~ 25456887 (+) True G125022
TU157044 lncRNA downstream 71 26655239 ~ 26655457 (+) True G125290
TU157050 lncRNA downstream 6556 26661724 ~ 26662436 (+) True G125296
TU157078 lncRNA downstream 128614 26783782 ~ 26784610 (+) True G125320
TU157103 lncRNA downstream 166814 26821982 ~ 26824273 (+) True G125336
TU157214 lncRNA downstream 578256 27233424 ~ 27233719 (+) True G125434
AMCG00002692 mRNA upstream 5434 26636971 ~ 26648551 (+) True AMCG00002692
AMCG00002691 mRNA upstream 110073 26539169 ~ 26543912 (+) True AMCG00002691
AMCG00002684 mRNA upstream 374848 26275314 ~ 26279137 (+) True AMCG00002684
AMCG00002683 mRNA upstream 412980 26234283 ~ 26241005 (+) True AMCG00002683
AMCG00002678 mRNA upstream 454724 26183699 ~ 26199261 (+) True AMCG00002678
AMCG00002695 mRNA downstream 66618 26721786 ~ 26731801 (+) True AMCG00002695
AMCG00002696 mRNA downstream 90996 26746164 ~ 26748406 (+) True AMCG00002696
AMCG00002698 mRNA downstream 111724 26766892 ~ 26776595 (+) True AMCG00002698
AMCG00002697 mRNA downstream 138407 26793575 ~ 26796776 (+) True AMCG00002697
AMCG00002702 mRNA downstream 221931 26877099 ~ 26889290 (+) True AMCG00002702
TU156956 other upstream 284460 26362212 ~ 26369525 (+) True G125219
TU156924 other upstream 375012 26275591 ~ 26278973 (+) False AMCG00002684
TU156498 other upstream 2231372 24422252 ~ 24422613 (+) True G124863
TU156391 other upstream 2972600 23677935 ~ 23681385 (+) True G124769
TU156281 other upstream 3363450 23152648 ~ 23290535 (+) True G124689

Expression Profile