RNA id: TU156955


Basic Information

Item Value
RNA id TU156955
length 2461
lncRNA type inter_gene
GC content 0.36
exon number 5
gene id G125219
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26362212 ~ 26369525 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cactaTGCAAATATCAAGtttctcaatttatttaaacaaatcaactTAGAAATATCATTGCATTTAACAAACTCTTTTAAACAcgtaaacatatttgttttccatgttccAGAAACAGGTAGAAACATCTGTTTAAATTTAGTCCTCATTATTATTGgttaggaaaacaaaagaatgatACAATTAATAAGGCAGGTTTTCTGAAGCTAAGCCAGTATTTCTCCATTGCTATACACTGTGacagaaatgcatacaaattgTTACTGGATAGTGCCACAGGCCAGTACCGTATAGATGCATACCAACCTCACTCTTTAAAGCCTCACAAACAAGATACTGTTGATATTAGTTTCAGCAACAGCCTTAAACTTAAATTGGTGTTTATGTTCatggtccttttttttttctttttaagcttTTAAGTTTGGTAAAGGCTATTTACAGTTTACATGTTCACAGCATGAActagtataaaataaaaaaataaaaataattaaacctgccagtctaaatgtatatatcacaCTGTGTCCATCAATGGCAATCCTTCTAAATACcattcttttcctttttaaaaatcaaacgaGATTAGatccctccccccaccccaccctgaAAAGacctgaagaaaaataaaataaaaacaaaactacttgCAGTGAAGAAATCTAAATGTACATCCTACAAGCTACAGCTTAAGGCAATAGAATTTCATTCCTGATACTGTATTAGTGACTCGGACTACAGATTAAAGCTGACATTAAAGACATCCTTCCTGTTTGTCAATCGGTTACATCACATATTGCACTCGATAAAATAGTTTCCTTCaaccagtttaaaaaaaaaaaaaaaaaaggcaaaatgaaATGCTTACATTCTATAATAAGTCTTctaagaatgaaaacacaaaggaaGTTACATAATCTGTAGCACAGCTCACTCACAGTATACTCAATTTTAGAAAAGGCCTTTATTTTACATATGGCTTGGCTTTTTCTATTGCAAAGAGGATACAAGAAAAGACTGACATTACAAGTACAGAACCAGTCAGAACTGTTAACATCTAAAATGTCAGGGCACAATGTAATAGTATGAAAAATACACTGAGGAAAACATTAAGCAATGTCTTGGTGTCATACACTGAAACCTCTCCCACATGAGACATAACAGGCAATCATTACAACTAGTCTGTTAAAGAATATTGGATACACATTTTTGCCCCCCTTTTGCAGTCTAGTTGAAGTACCTCACATTTGTTGTTGAATGACTGGATTATTTCACTGGAGACTAAGCATCACTGTATCACGTGCAATATGTGAAGTGTTAAAGAGAAGGGTAGGTAGCAACTCAAGGACTCTTCCTTGATATTCTTAATTTCACTGCAAATACTAGCCATAGATTTAAATTTACTATTTAGGTTAATTAACTTACATCTTTCAAAACTATTTTAGAatgaatcaaatgtttttaaccTTGTGCCCAACTGTATGTCAATGTTGTATGTTTATTCCTCTTCAAAATTCTCCACTCATTGCAGCATTGTTTACAGCGCATGGTGAGATTCAATTCACAAGCCCTGGACTGCTCTGAAGTACATGAGGCTGGTCAGGACCATAGCatttcaattttgaatgttaaaaaaagtacagtcaaaatttgtataaaattCTGTACACTTTCAAATTATTGCATAAACATGAATTTCATCAAAATAattttgcatattatttatcTTCTTTCAAGTTCAAACTCATGTTTCTCGTcttgctttcttcttctttttgacTTGCTTTGGTGATTCCCAGTTCTCTTCTGATTTTTTGTGAAGGTGGAGGCATGCTGTTTTGTTTAGCAGTAGAAACTGGAGGCTCTGGATCCGATAGCCTCTGTGGCACTTGTGAAGGGGTCTTCTTGGAAACACTCTCCAGTACAGGACTAGCCAGCTCTTTTTGTGCAAGTTTCTTCACCCAACAGGTGCACTCACAGCAGTGCTCTGGACAGGCAGGATACTCTCCTTTTCAGGATGGGCTGACAGAGTCACCTCCTCAACCTCTGCCAAAGATTCTTTTTCTTGCTCTTCGGTttAAGACAAGTATTTACTTGTGTGTTAGCCTCTTCGtcttgtttcttcttcttcttcttcttcttttttgacTTTCCACTTCCAGGAGCAGCAGAGtcagttttctctttttcatcATCAGATATCTTAACCTCCATCACAGGTTTCTCAAGATGAGTGGGAGCAGGGGCCTTTGGCTCCTCGTAATTCCCCCACAATTCAGAGGGAGCATTCCAGTCCGAGCTGGGGTCCAATGTGGAAAGGCCATCTGAAAACAATCCACATGGCACTTCAGCTAAAACTCTGATTCTACAGGTTTACAAACATCTCAATGTATTACTTCTACAGACAGGGATAGATTAATTTATGACTTCCAATGGTCTGATCCAATAATTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156818 lncRNA upstream 499906 25854158 ~ 25862306 (+) True G125109
TU156701 lncRNA upstream 905325 25456656 ~ 25456887 (+) True G125022
TU156696 lncRNA upstream 977900 25374942 ~ 25384312 (+) False AMCG00002661
TU156697 lncRNA upstream 977900 25374942 ~ 25384312 (+) False AMCG00002661
TU156686 lncRNA upstream 1033351 25328180 ~ 25328861 (+) True G125011
TU156958 lncRNA downstream 5040 26372579 ~ 26376125 (+) True G125220
TU157042 lncRNA downstream 286446 26653985 ~ 26655168 (+) True G125288
TU157044 lncRNA downstream 287700 26655239 ~ 26655457 (+) True G125290
TU157050 lncRNA downstream 294185 26661724 ~ 26662436 (+) True G125296
TU157078 lncRNA downstream 416243 26783782 ~ 26784610 (+) True G125320
AMCG00002684 mRNA upstream 83075 26275314 ~ 26279137 (+) True AMCG00002684
AMCG00002683 mRNA upstream 121207 26234283 ~ 26241005 (+) True AMCG00002683
AMCG00002678 mRNA upstream 162951 26183699 ~ 26199261 (+) True AMCG00002678
AMCG00002675 mRNA upstream 286763 26064621 ~ 26075449 (+) True AMCG00002675
AMCG00002676 mRNA upstream 317875 26041287 ~ 26044337 (+) True AMCG00002676
AMCG00002691 mRNA downstream 171630 26539169 ~ 26543912 (+) True AMCG00002691
AMCG00002692 mRNA downstream 269432 26636971 ~ 26648551 (+) True AMCG00002692
AMCG00002695 mRNA downstream 354247 26721786 ~ 26731801 (+) True AMCG00002695
AMCG00002696 mRNA downstream 378625 26746164 ~ 26748406 (+) True AMCG00002696
AMCG00002698 mRNA downstream 399353 26766892 ~ 26776595 (+) True AMCG00002698
TU156924 other upstream 83239 26275591 ~ 26278973 (+) False AMCG00002684
TU156498 other upstream 1939599 24422252 ~ 24422613 (+) True G124863
TU156391 other upstream 2680827 23677935 ~ 23681385 (+) True G124769
TU156281 other upstream 3071677 23152648 ~ 23290535 (+) True G124689
TU156269 other upstream 3182169 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile