RNA id: AMCG00002695


Basic Information

Item Value
RNA id AMCG00002695
length 363
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00002695
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26721786 ~ 26731801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATCGAGTCCTTGGGTATCATGATCTACAAGGCGCTGGATTACGGCCTGAAGGAGAATGAGGAGCGCGAGCTGAGTCCCCCTCTAGAGCAGCTAATTGACTGCATGACAAACAtagcagaggaggagggggacaCCTGTCCAGACGAGGGCTATGATGCTactgaggaggaggatgaggtaGAGGAAGATGCTGGTGAAGTCTCCAGTGTCCGTGGCTACCGGGATGTTCTCAAGCTCTGCTCTACACACCTCCCCAGTCCCTCGGATGCCCCCAATCACTACCAGGCTGTGTGTCGTGCCCTCTATGCTGAGACCAAGGAGCTCAGAACCTTTCTGCAGAAAATCAAGAGTGCTAAAGAG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157050 lncRNA upstream 59350 26661724 ~ 26662436 (+) True G125296
TU157044 lncRNA upstream 66329 26655239 ~ 26655457 (+) True G125290
TU157042 lncRNA upstream 66618 26653985 ~ 26655168 (+) True G125288
TU156958 lncRNA upstream 345661 26372579 ~ 26376125 (+) True G125220
TU156955 lncRNA upstream 354247 26362212 ~ 26367539 (+) False G125219
TU157078 lncRNA downstream 51981 26783782 ~ 26784610 (+) True G125320
TU157103 lncRNA downstream 90181 26821982 ~ 26824273 (+) True G125336
TU157214 lncRNA downstream 501623 27233424 ~ 27233719 (+) True G125434
TU157216 lncRNA downstream 503566 27235367 ~ 27275905 (+) True G125436
TU157252 lncRNA downstream 609181 27340982 ~ 27343083 (+) True G125469
AMCG00002692 mRNA upstream 73235 26636971 ~ 26648551 (+) True AMCG00002692
AMCG00002691 mRNA upstream 177874 26539169 ~ 26543912 (+) True AMCG00002691
AMCG00002684 mRNA upstream 442649 26275314 ~ 26279137 (+) True AMCG00002684
AMCG00002683 mRNA upstream 480781 26234283 ~ 26241005 (+) True AMCG00002683
AMCG00002678 mRNA upstream 522525 26183699 ~ 26199261 (+) True AMCG00002678
AMCG00002696 mRNA downstream 14363 26746164 ~ 26748406 (+) True AMCG00002696
AMCG00002698 mRNA downstream 35091 26766892 ~ 26776595 (+) True AMCG00002698
AMCG00002697 mRNA downstream 61774 26793575 ~ 26796776 (+) True AMCG00002697
AMCG00002702 mRNA downstream 145298 26877099 ~ 26889290 (+) True AMCG00002702
AMCG00002701 mRNA downstream 178917 26910718 ~ 26928468 (+) True AMCG00002701
TU156956 other upstream 352261 26362212 ~ 26369525 (+) True G125219
TU156924 other upstream 442813 26275591 ~ 26278973 (+) False AMCG00002684
TU156498 other upstream 2299173 24422252 ~ 24422613 (+) True G124863
TU156391 other upstream 3040401 23677935 ~ 23681385 (+) True G124769
TU156281 other upstream 3431251 23152648 ~ 23290535 (+) True G124689

Expression Profile