RNA id: TU156697


Basic Information

Item Value
RNA id TU156697
length 1963
lncRNA type sense_over
GC content 0.40
exon number 4
gene id AMCG00002661
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25374942 ~ 25384312 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGCGTCGTGCGCAATAGCGAGCAGACGCTGGCAGCCGTGAGAGCAGGATCGGCGTGGGAGTGGGAAGGGGTTGCGATTGTGCAGCTGCTTCAAGAAAAGGGGCCAGAAACAGGACTCTCACATCCGCAAAGTTCACCAAACACTAAAGCGTCAGttTATCTGGCAGTAATGGCTCGTGGGCACCAGAAGATTCAGTCCCAGCAGAAGAATGCCAAGAAACAGGCAGAACAGAAGAAGAAGCATGGACACGACCAAAAGACTGCAGCCAAGGCTGCTTTAGTGTACACCTGCTCCATCTGTAGGACACAGATGCCCGACCCCAAGACGTTCAAGCAGCACTTCGAGAGCAAGCATCCGAAGTCCCCCATGCCCCCAGAGCTAGAGGACGTGCAAGCATGAGCAGCGTCTGTGGGCATCTCAGCCAGCACCTGTCGCATCTCCAGAGTTGGCGAGAGCCCCAGTGAGCTTCAAGATTGCCCTATCAGGATACTTACTAAAACAGGTTAACTTGTATACAGCGCCAACAGCATCTCTGCACAAGCCAAATAAAATTAACCTTAAACGAGGTCGAGCAGTGAGCAGCTGACATAAGACACATTTAATATAATCCCTCTTTGTGCTAATGTGAATGAAGGGAGTGCTGCAAATGAtaggaactttttttttctggattccCTTCAGACCAACTGTcactgttcattatttttttttaaagtggctGTACAAACTGCAGATttattatagaatatatatatattttttttcttaatttattgcCACTTCCATGTTGTAGGACAACCTTGAATTGCTGCAGAAAGCTCCATAAAGCAGAGATGTACAGTATGAAATTCTTTCCTCTGTACTTTTTTTGAAACGATGAAAACCTCATGTTCTgaagtggtaaaaaaaaaatgtctgttcaTATGGCACATGGTTGGTGGGAATGGGGTCTGCCAGTTGTTATAAATGTGGCTCTGGGACTGTAGCTTGGAGTAACTGCTgtgaattcatttattttgatccTATCATGTAATCATACCTTTTTGATCAATTTCAAAACTGAAGTTCTGAAAGGTAGTTAAAGGTCCACCACTAGGGgcactatttgtttttctaaatgtcCACTCTGTTTGCAAAGGCCTATGTACACCACAGCTAACTTTTGAATTGCTCCACatttatattgtcattttaattgatgtgatttagcttttttaattattattttaaaggtctGTGCCAGAATCTGAATAAACTTGAGTCCGTTATTAATTAAAGTTGCCTTGGTATTATTTCCACAGTGTACCTTACATAAtgatatgcaaattaatttagtcttgtattaaacatatattcCTAATAGAagtccattttcttttttgccaaCTTCCTCACAAAATAAGCATAAATAGTTGTAAGGCTTTGGGACTAATCATTTTAAGGCATTTATAACCACTATCTGttaactctttaaatgtgtcaaTGTACTGCTGCTTCATGGATGGAGGTCTGAGAAGTACATAAGCCAATTTGTATTCTGATTTAAGGCTGCGTGAGTGACtgtatttcagtgaaaagttattttctctctccattctcTAATGTGGTCCTTTGTGGTGTGAATTTTGTGGTATTAGGGTTTTGTAATGGtgtggattaatttatttctgccTCTACCCATGAACTGAACTTGTCATTCTCCTTGTCTACAGCCAAACTCTAAAAGATCAGCGCTTGTGTTTCCTCTCTGAACTGCTGTGTGGTGGGATCAGAGGAGGGATTGGGGAAATTCAAATgctatatctttttttttttttttttttttctgtaactcTTGAACCACTGGTGCATAGCATTGTGTTCTCTTGGAACCAGTCTGTTTACCGGCAACATTTTATAACCTGTATTTATATCTGTGCcccaataatgtaatataacattttaataaagtattactttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156686 lncRNA upstream 46081 25328180 ~ 25328861 (+) True G125011
TU156679 lncRNA upstream 71787 25299701 ~ 25303155 (+) True G125005
TU156671 lncRNA upstream 235670 25138980 ~ 25139272 (+) True G124999
TU156623 lncRNA upstream 411462 24945238 ~ 24963480 (+) True G124965
TU156570 lncRNA upstream 598127 24769518 ~ 24776815 (+) True AMCG00002650
TU156701 lncRNA downstream 72344 25456656 ~ 25456887 (+) True G125022
TU156818 lncRNA downstream 469846 25854158 ~ 25862306 (+) True G125109
TU156955 lncRNA downstream 977900 26362212 ~ 26367539 (+) False G125219
TU156957 lncRNA downstream 977900 26362212 ~ 26366432 (+) False G125219
TU156958 lncRNA downstream 988267 26372579 ~ 26376125 (+) True G125220
AMCG00002658 mRNA upstream 76774 25279992 ~ 25298168 (+) True AMCG00002658
AMCG00002659 mRNA upstream 240678 25129616 ~ 25134264 (+) True AMCG00002659
AMCG00002656 mRNA upstream 396366 24966987 ~ 24978576 (+) True AMCG00002656
AMCG00002657 mRNA upstream 425443 24938866 ~ 24949499 (+) True AMCG00002657
AMCG00002650 mRNA upstream 599364 24761884 ~ 24775578 (+) False AMCG00002650
AMCG00002662 mRNA downstream 29519 25413831 ~ 25433868 (+) True AMCG00002662
AMCG00002663 mRNA downstream 63609 25447921 ~ 25455774 (+) True AMCG00002663
AMCG00002664 mRNA downstream 75489 25459801 ~ 25506282 (+) True AMCG00002664
AMCG00002667 mRNA downstream 172671 25556983 ~ 25573560 (+) True AMCG00002667
AMCG00002668 mRNA downstream 225382 25609694 ~ 25618765 (+) True AMCG00002668
TU156498 other upstream 952329 24422252 ~ 24422613 (+) True G124863
TU156391 other upstream 1693557 23677935 ~ 23681385 (+) True G124769
TU156281 other upstream 2084407 23152648 ~ 23290535 (+) True G124689
TU156269 other upstream 2194899 23068124 ~ 23180043 (+) True AMCG00002623
TU155679 other upstream 5098687 20274089 ~ 20276255 (+) True AMCG00002573
TU156924 other downstream 891279 26275591 ~ 26278973 (+) False AMCG00002684
TU156956 other downstream 977900 26362212 ~ 26369525 (+) True G125219

Expression Profile