RNA id: AMCG00003832


Basic Information

Item Value
RNA id AMCG00003832
length 474
RNA type mRNA
GC content 0.36
exon number 3
gene id AMCG00003832
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19933174 ~ 19943837 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAACAAACAGAAGTGCAGTACTGTTTCCAGTCTTCTAACTCCTCCTGCCCTAAGGAAGTGCGACCTACAGCAGTCTATGTGGTTTTTGTTGTggcaaaaaaacatgttaaagtaATCAGCGCTATTAGAGAACACAAAAGCTcaaatgatgaaaacaaaagtaaaaagatCACCATTAAATCGGAAAGAAAGGCTGTAAAAACATTGGGAATTGTAATTGCTGTCTTTCTCCTGTGCTTAGTGCCTTATTATATCTGCACTCTTGTTGACACTAATGTGAGTTTGTCTTCGTCATCTGTGGTAATTAATTTTCTATTCTGGCtgctatattttaattcagcTGTTAATCCCATCATTTATGCTTTGTTTTACCCATGGTTTCAGAAGTCTGTGAAATTGATTGTAACGTTAAGGATATTTAAACCAGCATCATCTTTGCTGAATTTATTTCCACAAAAACTCTACAcgtaa

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4303 lncRNA upstream 34631 19898266 ~ 19898543 (+) True G3550
TU4302 lncRNA upstream 35264 19897585 ~ 19897910 (+) True G3549
TU4301 lncRNA upstream 35639 19897110 ~ 19897535 (+) True G3548
TU4289 lncRNA upstream 207465 19725327 ~ 19725709 (+) True G3536
TU4287 lncRNA upstream 220117 19712803 ~ 19713057 (+) True G3534
TU4315 lncRNA downstream 150201 20094038 ~ 20240154 (+) True G3562
TU4316 lncRNA downstream 295817 20239654 ~ 20259023 (+) True G3563
TU4339 lncRNA downstream 447353 20391190 ~ 20419930 (+) True G3582
TU4381 lncRNA downstream 644254 20588091 ~ 20588564 (+) True G3620
TU4397 lncRNA downstream 833222 20777059 ~ 20801146 (+) True G3635
AMCG00003827 mRNA upstream 301727 19630470 ~ 19631447 (+) True AMCG00003827
AMCG00003826 mRNA upstream 482901 19448872 ~ 19450273 (+) True AMCG00003826
AMCG00003828 mRNA upstream 535488 19271965 ~ 19397686 (+) False AMCG00003828
AMCG00003815 mRNA upstream 752662 19168766 ~ 19180512 (+) True AMCG00003815
AMCG00003816 mRNA upstream 794974 19132983 ~ 19138200 (+) True AMCG00003816
AMCG00003833 mRNA downstream 173 19944010 ~ 19945017 (+) True AMCG00003833
AMCG00003835 mRNA downstream 188936 20132773 ~ 20133355 (+) True AMCG00003835
AMCG00003836 mRNA downstream 389286 20333123 ~ 20333536 (+) True AMCG00003836
AMCG00003844 mRNA downstream 1344623 21288460 ~ 21296218 (+) True AMCG00003844
AMCG00003843 mRNA downstream 1370237 21314074 ~ 21333224 (+) True AMCG00003843
TU4227 other upstream 563908 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 1780860 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 1790541 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 2249186 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 3893534 16035663 ~ 16039640 (+) False AMCG00003712
TU4541 other downstream 1605364 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 1802013 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 1978799 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 3766401 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 4739563 24683400 ~ 24683920 (+) True G4360

Expression Profile