RNA id: AMCG00004314


Basic Information

Item Value
RNA id AMCG00004314
length 4210
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00004314
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42548340 ~ 42576558 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGTTCTGACCTCTACTCCTCAGAGGCCGCAATTACACTGGACTAACTTTCATGCTGTAGCTGTCTTTTCCACTGCCTGGGCTCTCTGCCTTCCTGTCCTGCTTTCACCGTCCCATTTGGATTTAAGTTGCTGCCTTCAGACCCCCTATGTGATGCAAAGAGACAAAGAGCTGCAGAGAAGTGCTCtgtgagtctttttttttacttcagagaAACTCAACCTCAAGTATTGGCAACAagtgtcaaacaaaacagaaaaaagaaaagggctGCTGTTCCACAGACGAAGGATTCCTGCAGGGCCACAACACTGCTTATGCGTTGTCCCAAAAAGGATTAGCAAAGATAAGAGGAGCCCACATTATTCCACCCTAGAGATATTTCACAACCAAAGGAATTACCTTTGAAATAAACGCATCAAAAACACCATGACTGAGCTCACTGCTGAAGGGCGACCATCGGCCACCACCACCGCTGTGATAGACAGCAAGAATGGCAGCATCCTCCAATCATCTATCAAGTCGCCAAAGAAATCAGTGACCGAAGACTTAGCATCAACGTTCAGCTCCCCTACTGCATGGCTTCTGGTCATTGCTCTGATAGTCACCTGGTCCGCCGTGGCTGTCATCATGTTTGACTTGATTGATTGCAGGGGATATGTTGGCCGTGTGCACATGCTCAGCTCTGATCCCATGAAACTCATAGATGAGGCAGTGGAGGAATCCACTGACTGGGTTTATGGAGTCATGTCCTTACTGTCTGACATGATATCGCCAGACGACGACGATGATGATGACGACGAAGGTGAAGCTCATCCAGCCAAGCGGAAAGtgattAAAAAGGTCAAAGAAACTAAAGAAAGGAAAgtaagagaagagaagaaagcaGCACCCAAAGAGACACGGAAAGCTAAAGTTGCCAAAGTagaagaaaagataaaaaagccTGAGAAACTGCTCAAGAAAGCAGAGAAACCCAAGAAAGAAGTGAAAGCAGTGGAAAAAGCACAGCCTAAGGCCAAGCCAAAGGGAGAGAAGCCTGCGAAGACAGAGTCGAAAGATCAGTTTGAGTTCTGTCGCTATGTGGTTGACATGTATACACATGAGGATGTTTCTGCAGGTACTTTGAAAAGCCTTGTGTTGCTGTCTAATAGTACTTGTTTGAAGTTTCTTCCCTCATATGCTTAACAATGCTTCAAGCTGATGTCAAGTCTGAATAAACTAGCATAGGAATCAGAGCCAAGAGAAAgtaatgacatttttattactgttgCATGAGTGCCAGgatgctttaaaatgcagtatcattttacagaaaagaaagaatttCAAGATTAATTATATCTTTGATCAAATGCCCTTGCAACAAAAAAGCACAAGTGAAACAGTTTTCTTTAAAGCTCTCGATTGACGTAAAGTAGACAGCTCCCAGGACCAGCAGAAAATCTCTGCAGTGACATCAAAATGGATTACTCTTGATGTAAAGGTACAATCTTATGTAATGCACCGTGTTCCTGAGCTGTTGTTTTCAGATATCACTGTGGAAAAGGCTTTCTTGTAATTTGTGTCATAATTATTTAGACACACAGAAGGAAATTTACACCAAATAagacagtattttatttatgctggAAAAGTTATATTTGAGGGGATATAGAaatccaaataataaaaaacccAAAGACAGCGGTTAAATGCTCTTAGTTTGTAATGCCTGTTTTGCAATGTTATTTGACAAAGCTGAGGCGAGTGTATGAGGGAATAAACGGAAAACGCATCTGTAGTAATGTATATAGAATGAGggatgtttaattatttaatttgaataatacactttaatacttCAAATTAATCATTTGAGCTTTGGCTGTAAAGTCAGTAACTAAAAGtacataaattacagtaattattataatgtgtggCCTTAACTGACAGTTTGACTTTTCTTGCGTATGTAAATCATAACATCTTCCTGTTGAATCCCCCACGTTTATTAATAAGATCTTACTTGCATGTTTTTTCATCCTTCATGCCTCCTCCTCAGTTTGCTTCCCGGAGGATCTGAGGATATGTTTAACCAGTTCTTCCACTTTAGACAGTCAGTGCTGACACACACTATTGAACTACACTTTTCAACGAGTAGCCTCCTGTGTACGTGACACCTTTCTGCAAGTCACTATTTATAGGATTGTGCAGTGTCTTGTGAATGAGACCGTTCACACTGGGATCTCTCTCAGGGTTTCGTTCTCCGTGGTCTAGTTATGTTTTGAGGAAATCTTGCTTGGGAAATCAACCTTTATAAATCCATGGTTCTTTTGTTAAGCATATGAAATTTCCACAGCTTTTATGAAGAACACTGTTATCATCAGATAAATGCTGTGGTGAAACAGGacatggggaaaaaagcagctcatgatataataattaatgactTTATATCCTAGTTAGGATAATATATTCCAGTCACAACGCTGCATCagataatgaaaatacaaagtGCATACACTTCATCTCTCTTCTATATGAATGTGtgtcaaattacatttacaaaatccaTTAATTATGCTTTTATCGGTTTCAAATGCCAGTTCAGGCAGAGATAGCACCCCGGTTCATAGTAACTGCTGAAGCACATAATCAGATCTTTGTGtgtagaaaaatgtattcacgTGAATACATCAAAAGGGTTAGGGACAGCTAAAGCACACAAACTTCCTAAATTATTTTTGAGGTGTTcatgaagtaaaaaaaacagatcagtaTTATCCATAAAGTGACCTTGGCTTATCCAGCCAAATACAGGACTGTGAATGCAGAGCATGAAACACTTCACAGCAAATATCAACGAattcaatgtaatgtataattCCTCAAACTGGCAATGCTTATACAcctaaattataatgtattgaaTCATCTAATGACAGGAGGCTAGCTAATCTTTATGGTTGGGTTCCCaccagagcaaaacaaaacttcaaCCCCCTGCCAATCCCAGAGTACAGCCTGTGTACTAGATACATTTCAACTGAGCAGAGGgaaaaaacatctggaaaaaCAGACTTGTGATTTGGGATTGGTATTTCAGTTAAAGTATCGATTTAATCAGGCCATCAGTTTGGATGAAAGGACTTTGAAGGTTTGCCTTTCTCCTAACTAACTGCCGCTAACTCTGCCTGTTTCACACAGACCTGTGTGAATATATCCTAAGGTGTAGACCAGTTAGTCGTAATTGATTTGGGGttgaaattcaaataaatttgACTAGGGATGTTTTCATGCAAAAGTAAGATCGCCTCAGCTGCCAAGGCATGGTGTCGTATTAATGTGTGTTTACCCCATCATACATCAACCCCCACAGAAAGGTTAACAAATGACTAAACATGATCAGTCATGCTTAGATACTTTGAGAAAGAAGAATGCTTACTAGTTAAAACTACCACTTGAAATTACTTTGCTATGTTGTTCACATTAATATGCAGTGTTATTCTGGGGTGCTGCAAACCTCTGGCAAGTCTCAGCTCCTTATTAAGATGAGTTCCTCTGCATGTGCTGGCACATTGAACCAGGCAATCTGTCACTATTTTCCATGGGTAGCATAATTCAAACGTGTTTACGATAGTTCATGTTGCAGCTGTAGAAGTACAACAAATGAAAACCTAGAGGACTGTACAGGGTTGATCTGAAACACATGCGCCAATTTTAGTTTCAGATCTTATCATCATTcgatttacttttatttacatgtttagtCTTTTCATTGTTGAATACCTGCTGTGATTGCTCTTgatttccagcaggacaattgTCCAATTAAACTGTGATGTTGAGGGTGAACTGGCTCTGTAATAACAGAGGATTTGTCTGTACAGCTCGAGGATCTTTACTTTAAGATAAACTTTCAGATAATGCAAAACCTGAAGAAAAAATGTACGTCTTTCAAGTAAATTCGCTGAGAAAGGTTATTAATCCAGTCATAAGTTCCTCGGAAATTAAGACACGgtactaaaacaaacatgtctaTCTAATGACAGGACTGGAGATGCACATGTTATCTGATACTTTGTTAACTGTGTTGATTTGTGAATACCTCCTGCACTGAGTTcttagtgtatgtatgtatcttaaTTTGGTTTGTAATGTTGTATTGTCGTAAGAAACTACATTTGTTTGCCtgtaatcaatcaataaaactTTGACATGAACATGA

Function

GO: NA

KEGG:

id description
K23449 TRDN; triadin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8944 lncRNA upstream 72454 42475576 ~ 42475886 (+) True G7293
TU8939 lncRNA upstream 168379 42376625 ~ 42379961 (+) True G7288
TU8928 lncRNA upstream 182686 42364868 ~ 42365654 (+) True G7278
TU8918 lncRNA upstream 211697 42333425 ~ 42336643 (+) True G7272
TU8872 lncRNA upstream 458687 42087791 ~ 42089653 (+) True G7231
TU9117 lncRNA downstream 659260 43235818 ~ 43237653 (+) True G7418
TU9148 lncRNA downstream 769792 43346350 ~ 43346959 (+) True G7441
TU9208 lncRNA downstream 1015192 43591750 ~ 43595078 (+) True G7485
TU9307 lncRNA downstream 1501787 44078345 ~ 44081355 (+) False G7569
TU9305 lncRNA downstream 1506540 44083098 ~ 44088037 (+) True G7569
AMCG00004308 mRNA upstream 192940 42350231 ~ 42355400 (+) True AMCG00004308
AMCG00004309 mRNA upstream 201258 42338514 ~ 42347082 (+) True AMCG00004309
AMCG00004305 mRNA upstream 288599 42220020 ~ 42259741 (+) True AMCG00004305
AMCG00004304 mRNA upstream 333591 42210430 ~ 42214749 (+) True AMCG00004304
AMCG00004303 mRNA upstream 450018 42089871 ~ 42098322 (+) True AMCG00004303
AMCG00004315 mRNA downstream 15308 42591866 ~ 42634968 (+) True AMCG00004315
AMCG00004318 mRNA downstream 156258 42732816 ~ 42736569 (+) True AMCG00004318
AMCG00004321 mRNA downstream 350510 42927068 ~ 42975785 (+) True AMCG00004321
AMCG00004326 mRNA downstream 537126 43113684 ~ 43114271 (+) True AMCG00004326
AMCG00004328 mRNA downstream 580510 43157068 ~ 43177059 (+) True AMCG00004328
TU8899 other upstream 331978 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 1041109 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 5548182 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 5656594 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5773817 36774001 ~ 36774523 (+) True G6314
TU9000 other downstream 112221 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 3385452 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 5570330 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 6355892 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 7574706 50151264 ~ 50157719 (+) True G8377

Expression Profile