RNA id: AMCG00004321


Basic Information

Item Value
RNA id AMCG00004321
length 4325
RNA type mRNA
GC content 0.47
exon number 34
gene id AMCG00004321
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42927068 ~ 42975785 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCACAGCTTTCCCATGAGGATGAGGCGGAGCTGCAGGCTTTGCTGAGAAACCTACTGCACAGTGTTAAGGACCGCATCTCCGCAGCCCCATCTGTGGAGTGTGCAGAAGAGATCCTGCTACACCTGGAGGAAACGGACGAACATTTTCATAACTATGAGTTCATCAGGTATCTGCAGCACTGTGTGGAGAGCGCACTGGGGCCTGTTGTTGAGGCAGAGACGGAGCGCTGTGCCAGCGGTGAGGGACTGGCACTTGGGTCAGGTCAAGAAACATTAGTTCACGCTGTCACACAGAGGATCCGGAAATCCAACGAGTACAAACAAATGATACAGTCACTGAAAAATACTATGATGGTTACCGTGGAATCCCTGATTAATAAATTCGAAGAAGATCAGCTGAAGAAGCAGGAGATGCACCGCAAGAGCCAGCATGAGCAGCTCAGCAGCCTCTACACAGACAACTGCTCCGACAGCGACTCTTCTTTTAATCAGaGCTACACTTTCATTAAGCAAGAACAACTGCAGGTGATTGCAGATAAACTGGACCCTAGCCAGCCCAAGGAGGTGCGCTGGGACGCCCTGCAGACCCTGTGCTGTGCCCCGCCCTCTGATGTGCTCAGCTGTGAGAGCTGGAGCGCCCTGCGCAGGAGCCTCTGCTCTGCCCTCGCAGATGCCGACCCTGCCTTCAGTgatAAGGTTCTAAGGTTTTATGCTAAAACCTTTTCTTCTTCACCCCTGAATATAAGCAGAGAAATTTATACTAGTTTAGCTAAGCATTTGGAGTCAGGTTTCCTTTCACAAAGAGCCAGCATTTCTCCTGGAGCTGCGGGGTTAGACATACACAGTCCAGAGGTTGCACGGCTGCTCAAAAAGATGCGACTGTTGAATGAGTTCCAGAAGGAGGTGCCTTCGTTCTGGATTCGACACCCTGAGAAGTATATGGAAGAGATAATAGAACACACTCTATCACTGCTTTCATTAAATCTGGAGCAGAGTGTGAAGTCGACAAGCTCTGATAAAGCCCTGGAGCCGATCTACTTCCTATCCTTGCTTGACATCAGAGCTACTTGGTTTAAAAAGTGGATGCATGGGTACTACAGCAGGACAGTAGTCTTGAGActtcttgaaaacaaatacaagtctTTGaTAGTGGCATCTCTTCAACAATGTATTCATTACTTTGAATCCACTGAGTCTGTTCCTGGTGAGACCCCCAGCTGCACACAAATTGGGCCTACCCAAAGGACTTCCTATTCTGCCAAGGAGttacaatacttttattttgttcattcgCTCTGTCTTCTGGGGAGGCTGCTCATGTACACACATGGAAGGAGACTTTTCCCCATTAAAGTAAAGAGACGAAAAGACCTGATCATCATTCTCATTAGAATAATGTACAGCCAACCAAAACCATTTTACAGCGATGCATCACATGCAGACCCCTTATCACCCACAAGCCTTGTGATGGAAGAGCTGCGAGCGCTGTGTGACTGGAAAGAGTGTGCAACCGAGTGTGTGTACAAGGCTCCCGTGATCGAGTGTCTCCTGTCCCCCATCATTGCCTTACTGAAAGGAAAGCGGGTAAGCTTACCCTCCCCTGAAACAACGCTGACACACATAGCAGATGTGTTGGCAAGGATTGCTTCTACGGAACGGGGACTTTCCCTTTTTCTGTACGAGGGGAATTTTATGATCACTGAGGGAGAAAGCATTTCAGCTGCACACATGATCGTCCAGTTTACCAAAAAGCTCCTTGGTAACCAACTTCCTGCGTTGTACGAATCTGGCTTGTTGTTCAGCTTAAAAGGAGCTTTCATCTTTGTCTGCCGTCAGATGTACAATACATGTGAGGGTCTGCAGGTCCTCAAACCCTACGGCCTGCATACCTGTATTGCTGATGCCTGGAAAAAGacgagctctcagtcggaaagAGTCCCAACTCCAGTCCCGGGAGCCACTTCTAGTGCAGCTACTCAAGATTTACAAAACAACACAGTCTGGGAAGAAACCCTGCTAGACAACCTGCTGCATTTTGCCGCAACGCCACAAGGACTCCTGCTCCTTCAGCAGACTGGGGCCATCAATGACTGTGTCACTTACATGTTCAGCAGGTTCACCAAAAAGCTTCAGGTCAGCTGCTGTGAAAAGTTTGGCTATGGCGTGATGGTGACCCAGGTAGCTGCTACAGCCCCTGGTGTGGTGGCGCTTCAGAGTTCAGGATTTATCCAAGCAACTGTTTTGGAATTGTGGTCTGTGCTTGAGTGTGGGAGAGATGATGTTCGAATGATTCACCCAAGGTCAACACCAATGGATCCCATTGATAGAAGCTGTCAAAAGACATTTCTTGCTCTTGTCAATCTTTTATCTTCTTACCACGCTGTGTACGAGCTGCTTGGTAAACAGGGGATTCCTAACAAGCCAGAATACCCCCTAAGAGAGATGCCTACCTCCATCATTgatattCTCGACAGAATTATCATAATTAATTCAGATGCAAAAATACACTCGTTGTTCAACTTTGAACAGTCGCACACATTTGGTCTCAGATTATTGTGTGTCATGTGCTGCAATCTGGACACCCTTTTGCTTTTGGAGTCACAGTACAGAGTTTCGGAGATATTGCTTCAGAGCCAAAAGGATAACGTGTCGGATGCCTCTGTAGGTCAAGGGAAGTTCATCATTGACGGGCTGTCGGTGGAGAGGAATCATATTCTCGTGAGGATGAATTTGATTGGAGGGCCGTCAGAGCGCTTTTTGCCCCCCCGTGCACTACAGAAGGGCAGTGACCTATATCCTTGGCCAATGTTTTCATCTTATCCATTACCAAAGTGTTATCTTCTGGATGTACCTAAGATGCCTCCTTGTACACAAGAATCCAGAGAAACAAGCCAGCTGGATGGAGACCTGCAGGAAGCAGTTCTGCAAAGCCATGACCACCAGGTCCATGATCATGACAAGCAGTGgatAGCAGTGAAGCAAATGGAAATAGAGCTATTTGATTGTgTTCTTGCTGATTTACTTGAAAAAGCTGTGATGAATCTCTCAGCCAATACATCCGAGTGCTTCTTCTCTCTGACAGAATACAAAGCGGTTGACAGCAGTGTGAAGAACCACAACCTGTCATCCTTGCAGCATCTGGGGATTAAAATGACTATCAGgTATGGTAAGTACTTCAATCTGCTAAAGGATGAATCGGAACAGGATCTTTGTCTGCTGCTGAAACACTGCCAGAAATTCCTCCTCCAacaacaagcaaaaataaagtCGCCACTTCGTTGTCTGCAGGGAGCCTATCCCGGCTACGACTGGTTTGCATCCTCTGTGTTCCTGATAATGTCTGGAGAGCAGGAGCGGGCATTAACATTTCTGCTGCGATTCTCCACTCTTCTTGTCTCAGCATTTTTGTGGCCGCCCAGACTACATGTCTCAatcCACCACCCTGTAGAGGTAGCGGCATCTGGTATCCACCCCATGTATTCCTGCACTGCTCATTATGTGGAGATGTTGCTGAAGGCAGAAGTGCCGCTGGTCTTCTCTGCCTTCCGCATGTCTGGATTCACGCCCTCACAGatcTGTCAGCAGTGGCTCGGGCAGTGCTTTTGGAACTACTTGGACTGGCCAGAGATCTGTCATTACATCTGCGCCTGCATTGTCATGGGTCCTGACTACCAGGTGTATGTTTGCATTGCTGCGCTGAAGCACTTGCAGCAGGACATcctgcagcacacacagactCAGGACCTCCAAGTATTcttgaaaGAAGAACCGATCCACGGTTTCCAAGTGAGTAATTACTTGGAGTACATGGAGGGCCTGGAGCGCCGCTACAGAGCCGTGCTGCTGACAGACATGAGGAATATCAAACTGAAACTTTCATAGGTTAAACTGGATTATTGAAATGCCAGGCTGCTGCCCTGGAGCTCAGTGACCCCTTGGAAGTCAGGACCAGCGTggggttgtttgttttgcattcctcCCCCTCAAGTCAACAGTCTTTAGTACACATTTATTctcgtgtgtgtgagtgagtgattgTGCTTCTATTTTTGTaactaataatattattaactgACTGATGCAAAGCTTAAGAAAATACTGTATTACTGTGTAAAGACTGAAGTTTGTTCATGTGTCTGcttatttaaaagtgaaatctCACGCACTGTTTTTCATATGAAGGCTAGCAtcttgattaaataaattaaactaatgcCTTTGCATTCATTCTTCTTTTATAACTTTCATAATATGTCAAACTAGCCTGAGCAGAAAGACAATGTTGCCATTTTGCTGTGAAGAACTTTATTGAGTGGAAAAAG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0060271 cilium assembly biological_process
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8944 lncRNA upstream 451182 42475576 ~ 42475886 (+) True G7293
TU8939 lncRNA upstream 547107 42376625 ~ 42379961 (+) True G7288
TU8928 lncRNA upstream 561414 42364868 ~ 42365654 (+) True G7278
TU8918 lncRNA upstream 590425 42333425 ~ 42336643 (+) True G7272
TU8872 lncRNA upstream 837415 42087791 ~ 42089653 (+) True G7231
TU9117 lncRNA downstream 260033 43235818 ~ 43237653 (+) True G7418
TU9148 lncRNA downstream 370565 43346350 ~ 43346959 (+) True G7441
TU9208 lncRNA downstream 615965 43591750 ~ 43595078 (+) True G7485
TU9307 lncRNA downstream 1102560 44078345 ~ 44081355 (+) False G7569
TU9305 lncRNA downstream 1107313 44083098 ~ 44088037 (+) True G7569
AMCG00004318 mRNA upstream 190499 42732816 ~ 42736569 (+) True AMCG00004318
AMCG00004315 mRNA upstream 292100 42591866 ~ 42634968 (+) True AMCG00004315
AMCG00004314 mRNA upstream 350510 42548340 ~ 42576558 (+) True AMCG00004314
AMCG00004308 mRNA upstream 571668 42350231 ~ 42355400 (+) True AMCG00004308
AMCG00004309 mRNA upstream 579986 42338514 ~ 42347082 (+) True AMCG00004309
AMCG00004326 mRNA downstream 137899 43113684 ~ 43114271 (+) True AMCG00004326
AMCG00004328 mRNA downstream 181283 43157068 ~ 43177059 (+) True AMCG00004328
AMCG00004327 mRNA downstream 240321 43216106 ~ 43234293 (+) True AMCG00004327
AMCG00004331 mRNA downstream 319867 43295652 ~ 43317408 (+) True AMCG00004331
AMCG00004330 mRNA downstream 353587 43329372 ~ 43338860 (+) True AMCG00004330
TU9000 other upstream 235959 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 710706 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 1419837 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 5926910 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 6035322 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 2986225 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 5171103 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 5956665 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 7175479 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 7768006 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile