RNA id: AMCG00004416


Basic Information

Item Value
RNA id AMCG00004416
length 1534
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00004416
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48629172 ~ 48643430 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGTGGGAGTGGATGCGGAGTCGGTGACTGATAATCCATTGGCTCTTAACGACCCTCCTCCGACTGCGGTGCAGGAGGTTTCTTCAAAGGTTACTGCCCACAAACTGGTGAAGATAGTAGCAGTCGTGTGCACAGTTGGACTACTTGGTGGTTTAGCAGCAGGAGTCTGGTTTTTAGTAAGGCTTCTGCTGAGGCCTGCTGCCGCCCACAGCCCGGCCGGTCTGGGAGACACAAAGGAGACATTGTTCTGCAATGTGACTGAGGATGTCACTGTCACTGACCCGAGGAAAGAGAACTCTTTGCTGGAGATCCAGCTGGAGAAGCTGCAGACCTGGCTCCCCGTGTGCTACGAGAGGTGGAACTCGTCTCTGGGAACCCTGGTTTGCAGGCAGCTGGGCTATCTCAGGCTAACAAAGCACAAAGGAGTGAACCTGACAGACATAGGACCCAATTACACGGATGGGTTTGTTCAAATTACTTCTGAATACAAAACTAATCTGGAAAACATATGGCAGTTCAGgGGAAGTTGCATTACAGGCAAAGTGATAGCTCTAAAATGTTTCGGTGCCCCCGAGACCTCAGTAGCCCCTGAGAAACGGTCAGTGCGTCCCCACTTTCCTGACTTATGCATTGTTGGTTTTGGTGTTTTCCTGAGCGTGTGGGACTCGAGCAAAGCTGTCCCGAATAATAGGAGGGATGGAAGCCACCTTGGGAAGATGGCCCTGGCAAGTGAGTCTCTACTACAGCTCCAGACACACCTGCGGGGGCTCCATTATAACAAGCCAGTGGATAGTTACCGCTGCACACTGTGTACACAAGTGTCCAGCTGGGTGGTGTATGCAGGAATAGTCACTAGAAGTTCCACTAAACTGGTTCAACACACAGGATACGCTGTGGAGAagattatttacaataaaaactaCAATCACAGAAGTCATGACAATGACATAGCCTTGATGAAGCTGAAGACACCATTAAACTTTACAGATACCATTAGGCCAGTCTGCCTCCCTCAGTATGATCATGATTTCCCTGGAGGAACACAATGCTGGATTTCAGGCTGGGGCTACACAAGACCTGATGATGTACATATTCCAGATACACTTAAAGAGGCTCCAGTTCCTTTAATTAGCACTAAGAAATGCAACAGCTCCTGCATGTATGATGGGGATATTActcccagaatgctttgtgCTGGATACACAGAAGGGAAAGTAGATGCCTGCCAGGGGGATAGCGGGGGGCCACTGGTGTGCCAGGACGAGAGCGTGTGGCGATTGGTCGGTGTAGTCAGCTGGGGTACAGGCTGTGCCGAACCCAATCATCCCGGCGTGTATACCAAGGTCGCAGAGTTTCTGGGCTGGATTTACGAAATGATTGAGAACTACTGAACAGAACCAGTGAACAAGGACACTGAAAGATCCAACACGCCTTTCAAGAATGTTTAATCTGAAAATTAACAGAATCTGCTTTTTGTCTGAAGATGTGAATGTGAGGAAattctaaaaacattttttttttttttttttttag

Function

GO: NA

KEGG:

id description
K09636 TMPRSS5; transmembrane protease serine 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9898 lncRNA upstream 160361 48463181 ~ 48468811 (+) True G8044
TU9817 lncRNA upstream 943291 47685520 ~ 47685881 (+) True G7977
TU9814 lncRNA upstream 980598 47648188 ~ 47648574 (+) True G7974
TU9785 lncRNA upstream 1631367 46992217 ~ 46997805 (+) True G7949
TU9730 lncRNA upstream 1906084 46721829 ~ 46723088 (+) True G7911
TU9944 lncRNA downstream 204096 48847526 ~ 48848126 (+) True G8083
TU9954 lncRNA downstream 253687 48897117 ~ 49026355 (+) False AMCG00004421
TU9955 lncRNA downstream 253687 48897117 ~ 48978632 (+) False AMCG00004421
TU9968 lncRNA downstream 312537 48955967 ~ 48959831 (+) False G8103
TU9967 lncRNA downstream 314170 48957600 ~ 48959831 (+) True G8103
AMCG00004414 mRNA upstream 5020 48613149 ~ 48624152 (+) True AMCG00004414
AMCG00004404 mRNA upstream 176475 48445728 ~ 48452697 (+) True AMCG00004404
AMCG00004407 mRNA upstream 185905 48428416 ~ 48443267 (+) True AMCG00004407
AMCG00004408 mRNA upstream 236356 48373270 ~ 48392816 (+) True AMCG00004408
AMCG00004406 mRNA upstream 273997 48350861 ~ 48355175 (+) True AMCG00004406
AMCG00004415 mRNA downstream 187108 48830538 ~ 48846603 (+) True AMCG00004415
AMCG00004421 mRNA downstream 334212 48977642 ~ 48978607 (+) False AMCG00004421
AMCG00004422 mRNA downstream 366261 49009691 ~ 49040036 (+) True AMCG00004422
AMCG00004424 mRNA downstream 400160 49043590 ~ 49057634 (+) False AMCG00004424
AMCG00004426 mRNA downstream 635730 49279160 ~ 49293068 (+) True AMCG00004426
TU9841 other upstream 482016 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 2660866 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 5938063 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 6412810 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 7121941 41459576 ~ 41507231 (+) True G7094
TU9962 other downstream 289020 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 1507834 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 2100361 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 2471511 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 3296131 51939561 ~ 51946818 (+) True AMCG00004501

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017981 False 1749 mRNA 0.47 12 NC_007126.7 18164461 ~ 18176694 (-)
grasscarp (Ctenopharyngodon idella) CI01000053_01589610_01599104.mRNA True 1721 mRNA 0.45 11 CI01000053 1589610 ~ 1599339 (+)