RNA id: TU10023


Basic Information

Item Value
RNA id TU10023
length 1547
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G8140
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49246488 ~ 49248034 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAATTTCTAAATGATTTTTATTAGGAATAAATACTTTAAAGTcacagacaattaaaaaaaaaatgaactggaGTGTAAactaaaaattatatttacaatatttgtttgcGCACAGCTAGATGAATGTATACATAGTATACAGAGCAGCCAGTACAATAACATGTCTTTTGCAGTACAatgtgcaaaagaaaacaaacaaaattacaagtaATATAGGAACCATCTTTTAGATGGAAGATGTGGTCCCTccgaaccaaaaaaaaaacataacaaaaacaaacaacagcaacaacaaaagtaTGTGGTTGTAATGGGTTACAGGgttctcatttaaaatactgaGCACATACAGATGGAAACTAAGGGGTCACAATTTAAGACATATGTACAGCATTGCAATTATCATGCCTTTTtgccattgtatttatttattagcaataACTTATGTTTAATTGGCAACTGTACCAGACAGGGCTTGATATTAGCAGCTGCACTGCTGGCATTTAATATGATGAAAAAAGGACAGAGTGACGgccaaaataacatttaaacaattggaagaagaaacaaatccaAAAGAATGACCCAATTAAATGAGTGGGTAGACAATGGTGATCAACAACAGAAGTCTTCTACATTTAATATCAGAGGTAATGTTAATGAAGGGCATAAATCAAACCGGATATACTAACAGCCAAATTGGCATTGTAACAGGACTTACAGCTAGAAGGACACTTTGTTTCGTTTGAAGACTTTTAAAGGTGTGGTTAATATCGTCAAGGTTTTGTTTCTTATTCTCTTCTAGGCACATgccatttagattttttttttgcagttttgatATTGTTATTTCTGCTCATGTAGTTATCGCCACACTCTGTAGTCAGTGTTCCTCATCATCAGGGGTCACAGGCCAGCagagaatatatttgtattggtcCAATTAAGTTATGGTGGGACAGTTATGGTCAGAACTAGGGGGAGAAGAAAACCTGTGTCCATTGTGAACGAGAGCTGCGGAAAACTGCAACCAAACAGATGCAGACCAGAACAAAACCTGGATCCTCCCGTCTCTCACAGATCTCAAATATATTAGTTGATCCTGgctttttgtctgtgtttttgtttttaagttaaaatGGGAATGTGGGGggaagttttaatttgtttcaagcCTTAGTCCTCAGAAGATCTTTTATTGATAATGGCAAATTACAATATGAACATTATTATGAGGCATTATTAGGTGGTCACAAGTGCATGTACTTAGGGGTGGCGGATTAACAGTAAAATGCAAGGCCAAACAAACTATGCTGCTGCCAGGGGGTGCCCAAGCAGTGTTAAAGTTGTTGACTGGAGGGAGTGTTTTGCAGTATATAGGCATAGTCACACATATGGTCGACTGTAGTGTGTATATTGAAGAAGaactgcataaaaaataatggtaaaaaaaaaaaatatcaatgcaAAAGTATATCACTTTAAAAACACGCAGGATTGTACTACATAAGAAGACATTAGTACAGCAATCCAATATTAATTtcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9977 lncRNA upstream 186433 49055360 ~ 49060055 (+) True AMCG00004424
TU9980 lncRNA upstream 217305 49024156 ~ 49029183 (+) True G8111
TU9955 lncRNA upstream 267856 48897117 ~ 48978632 (+) False AMCG00004421
TU10030 lncRNA downstream 59811 49307845 ~ 49318816 (+) False AMCG00004425
TU10055 lncRNA downstream 186009 49434043 ~ 49435751 (+) True G8167
TU10096 lncRNA downstream 334084 49582118 ~ 49586095 (+) True G8188
TU10214 lncRNA downstream 563301 49811335 ~ 49814024 (+) False AMCG00004442
TU10255 lncRNA downstream 702585 49950619 ~ 49951516 (+) False AMCG00004449
AMCG00004424 mRNA upstream 188854 49043590 ~ 49057634 (+) False AMCG00004424
AMCG00004422 mRNA upstream 206452 49009691 ~ 49040036 (+) True AMCG00004422
AMCG00004421 mRNA upstream 267881 48977642 ~ 48978607 (+) False AMCG00004421
AMCG00004415 mRNA upstream 399885 48830538 ~ 48846603 (+) True AMCG00004415
AMCG00004416 mRNA upstream 603058 48629172 ~ 48643430 (+) True AMCG00004416
AMCG00004426 mRNA downstream 31126 49279160 ~ 49293068 (+) True AMCG00004426
AMCG00004425 mRNA downstream 50702 49298736 ~ 49318835 (+) True AMCG00004425
AMCG00004428 mRNA downstream 155174 49403208 ~ 49411567 (+) True AMCG00004428
AMCG00004427 mRNA downstream 177731 49425765 ~ 49429808 (+) True AMCG00004427
AMCG00004431 mRNA downstream 271090 49519124 ~ 49522913 (+) True AMCG00004431
TU9962 other upstream 312393 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 1099332 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 3278182 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 6555379 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 7030126 42212510 ~ 42216362 (+) False AMCG00004304
TU10340 other downstream 903230 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 1495757 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 1866907 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 2691527 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 2741319 51989353 ~ 52013630 (+) True AMCG00004509

Expression Profile