RNA id: TU11127


Basic Information

Item Value
RNA id TU11127
length 200
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G9000
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53145595 ~ 53145794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acagcacTATTCTCCTCAAACCACTGTGTTCCTATAATGTTTTCCCCATCCACTTTCCTTTGCTGTGCTTTTCTATGGTTCATATCATGCTGTACTACACCTGTCCATACATTACTGTAATTTCACTCTTTccctacactacactacactccCTAAACCttcagggaaataaataaaaaagtagggCAAATTCAGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11113 lncRNA upstream 25899 53117197 ~ 53119696 (+) True G8987
TU11108 lncRNA upstream 38598 53106744 ~ 53106997 (+) True G8982
TU11001 lncRNA upstream 242813 52839448 ~ 52902782 (+) True G8900
TU10923 lncRNA upstream 523329 52619475 ~ 52622266 (+) True G8836
TU10922 lncRNA upstream 528743 52616536 ~ 52616852 (+) True G8835
TU11185 lncRNA downstream 153869 53299663 ~ 53299872 (+) True G9043
TU11289 lncRNA downstream 531770 53677564 ~ 53762566 (+) False G9129
TU11296 lncRNA downstream 531770 53677564 ~ 53762566 (+) False G9129
TU11299 lncRNA downstream 531770 53677564 ~ 53831921 (+) True G9129
TU11298 lncRNA downstream 571273 53717067 ~ 53719277 (+) False G9129
AMCG00004542 mRNA upstream 42974 53076079 ~ 53102621 (+) True AMCG00004542
AMCG00004543 mRNA upstream 86841 53045999 ~ 53058754 (+) True AMCG00004543
AMCG00004536 mRNA upstream 102374 53034664 ~ 53043221 (+) True AMCG00004536
AMCG00004537 mRNA upstream 112339 53018982 ~ 53033256 (+) True AMCG00004537
AMCG00004541 mRNA upstream 131250 53011189 ~ 53014345 (+) True AMCG00004541
AMCG00004545 mRNA downstream 41796 53187590 ~ 53192191 (+) True AMCG00004545
AMCG00004548 mRNA downstream 47869 53193663 ~ 53195262 (+) True AMCG00004548
AMCG00004547 mRNA downstream 60629 53206423 ~ 53210773 (+) True AMCG00004547
AMCG00004549 mRNA downstream 87997 53233791 ~ 53244730 (+) True AMCG00004549
AMCG00004546 mRNA downstream 113385 53259179 ~ 53270254 (+) True AMCG00004546
TU10796 other upstream 1131965 51989353 ~ 52013630 (+) True AMCG00004509
TU10780 other upstream 1198777 51939561 ~ 51946818 (+) True AMCG00004501
TU10626 other upstream 2030333 51114941 ~ 51115262 (+) True G8606
TU10527 other upstream 2392246 50743791 ~ 50753349 (+) False AMCG00004477
TU10340 other upstream 2987876 50151264 ~ 50157719 (+) True G8377
TU11143 other downstream 37600 53183394 ~ 53183983 (+) True G9012
TU11164 other downstream 118513 53264307 ~ 53270070 (+) False AMCG00004546
TU11263 other downstream 457967 53603761 ~ 53607898 (+) True G9118
TU11273 other downstream 490245 53636039 ~ 53643598 (+) False AMCG00004563
TU11276 other downstream 502217 53648011 ~ 53843859 (+) True G9128

Expression Profile