RNA id: TU11395


Basic Information

Item Value
RNA id TU11395
length 1256
RNA type TUCP
GC content 0.51
exon number 2
gene id G9197
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54032031 ~ 54033307 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTattttgacagattttttttttctttttttgaggcTTCTATTAAAACACAGTTATACAGAACAGTTGAAAACAATCACAACTTGCATCTTATTTACAGCACCTGtttcatatacatacacagatatatgtatataaaatccCTTGCACAACAGTTTGGTAgccagaaaaactaaaaaacaaaataaaaaaggaaaataaaaagaagaaatcgGTGAGTCTGTTCCTCCCCCGCCCCTCCACTGATCtgtgaaatgtacatattttacacctataaaaacaaaacaaaaagtttcacaactattttattattccaGCCGAGCTGTTTTGTCGCGTGGTTGTGAACACTACACCTCGTGTCGCCACTCAAATGTTAAAAAAGGCAGCGCCCAGTTTTTGATTTTTcaaccgttttttttttttgtggtttcctgaaaaattagaataatttttgtagtaataataataataataataataataataatgagaaaccgcaataataataattataataacattaacaatcaGAATTATaacataatggaaaaataaaaagtccacCCAGAGGAAATGAAGTTTGTACAGCGGGAGCGCCGGGCCTCAGAAGGGCATGTTGGCCATGCTGCTGGGTCCGTACCCCAGGGGGCTGTCCAGGGACATGCCCCGCTGGCGCAGGCTCTGGGGGCCCATCATGCCAGCCTGGGGGTGCAGGGGGCCCATCATGGGGCCCTGAGGGGACAGGAGGGGACCCTGCTGGGCATAGGGGTCCCCGGGGAGGGACATGCTGCGCTGCTTGGCCTGCATCATCATCAGGCTCTGCTGGGCCATCAGGCTgtgctgatgctgctgctgggggGACATCATGGAGGGGTGCTGGAGCAGGCTGTTGGCCATCATggcttgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgttgctgctgctgctgctgatggtggtggtgttggtggtggtgttggtgcTGCATGGAGTTGTGGGGCGGCCCCATGGCTGTCCTGCCCATCATGTGTCCCGGGTGGCACATGGGTGGCATCCCGCCCCCGGCCCCCATGCCCCTGGCCAGACCCGGGGGCGGTCCCTGGCCCATGCCCAGGCCGGGCCGCAGGCCGGAGTGGGGGTGGTGGGGCAGGGGCGGGGGCAGCTGCTGCTCGGCCATCATGTTCTGCAGGTTGGCCAGGTGGGGGTTGGAGGAGGGGGCGCTGCTGTGGGGCGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11389 lncRNA upstream 19002 54012826 ~ 54013029 (+) True G9191
TU11367 lncRNA upstream 50048 53933169 ~ 53981983 (+) True G9170
TU11346 lncRNA upstream 165584 53864940 ~ 53866447 (+) True G9160
TU11292 lncRNA upstream 170503 53860327 ~ 53861528 (+) False G9129
TU11299 lncRNA upstream 200110 53677564 ~ 53831921 (+) True G9129
TU11444 lncRNA downstream 170914 54204221 ~ 54204990 (+) True G9243
TU11445 lncRNA downstream 172711 54206018 ~ 54206971 (+) True G9244
TU11446 lncRNA downstream 173844 54207151 ~ 54207360 (+) True G9245
TU11447 lncRNA downstream 174314 54207621 ~ 54207935 (+) True G9246
TU11448 lncRNA downstream 176409 54209716 ~ 54209918 (+) True G9247
AMCG00004577 mRNA upstream 7875 54016361 ~ 54024156 (+) True AMCG00004577
AMCG00004576 mRNA upstream 19689 54011849 ~ 54012342 (+) True AMCG00004576
AMCG00004568 mRNA upstream 168814 53849628 ~ 53863217 (+) True AMCG00004568
AMCG00004566 mRNA upstream 183977 53826947 ~ 53848054 (+) True AMCG00004566
AMCG00004564 mRNA upstream 312256 53717067 ~ 53719775 (+) True AMCG00004564
AMCG00004578 mRNA downstream 43857 54077164 ~ 54100748 (+) True AMCG00004578
AMCG00004580 mRNA downstream 224261 54257568 ~ 54281403 (+) True AMCG00004580
AMCG00004586 mRNA downstream 261627 54294934 ~ 54302577 (+) True AMCG00004586
AMCG00004584 mRNA downstream 274941 54308248 ~ 54311938 (+) True AMCG00004584
AMCG00004585 mRNA downstream 280815 54314122 ~ 54327599 (+) True AMCG00004585
TU11293 other upstream 182277 53847922 ~ 53849754 (+) False G9129
TU11276 other upstream 188172 53648011 ~ 53843859 (+) True G9128
TU11303 other upstream 264921 53766543 ~ 53767110 (+) True G9132
TU11273 other upstream 388433 53636039 ~ 53643598 (+) False AMCG00004563
TU11263 other upstream 424133 53603761 ~ 53607898 (+) True G9118
TU11486 other downstream 285787 54319094 ~ 54322914 (+) False AMCG00004585
TU11499 other downstream 317650 54350957 ~ 54352720 (+) False AMCG00004588
TU11498 other downstream 319875 54353182 ~ 54353945 (+) False AMCG00004588
TU11514 other downstream 361484 54394791 ~ 54395300 (+) True G9300
TU11647 other downstream 567311 54600618 ~ 54629207 (+) False AMCG00004604

Expression Profile