RNA id: TU1613


Basic Information

Item Value
RNA id TU1613
length 256
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1375
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8843827 ~ 8844082 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attaatttgtaataaattgTAGTTTTGCTTCCTCATCACACTGGATGGTGTTGGATCCACATAAGAACAATTTGTCACAAAAACAGCAGCCAAAATCAGACAGATTGATTTTAGGTCTGCAGCTGATGAATTTGTTTCTgtggattttaaatgcattccttTCCCCAGCAGGCCTGTATCTGTCCTCCTTCTCCAAAGCAGAACCGCTAAATTATTCATCCCCAAAGTCTTTTCAATGGATTTTTAAGTACTTCag

Function

GO:

id name namespace
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1577 lncRNA upstream 143273 8699466 ~ 8700554 (+) True G1347
TU1573 lncRNA upstream 176900 8661032 ~ 8666927 (+) True G1343
TU1531 lncRNA upstream 399803 8443740 ~ 8444024 (+) True G1303
TU1519 lncRNA upstream 503235 8340266 ~ 8340592 (+) True G1291
TU1499 lncRNA upstream 566844 8275762 ~ 8276983 (+) True G1271
TU1625 lncRNA downstream 96069 8940151 ~ 8941751 (+) False AMCG00003541
TU1675 lncRNA downstream 165215 9009297 ~ 9022573 (+) True G1430
TU1676 lncRNA downstream 165215 9009297 ~ 9027632 (+) False G1430
TU1677 lncRNA downstream 165215 9009297 ~ 9020218 (+) False G1430
TU1701 lncRNA downstream 256536 9100618 ~ 9106764 (+) False AMCG00003544
AMCG00003535 mRNA upstream 1408 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003534 mRNA upstream 191357 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003533 mRNA upstream 506177 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 551609 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003530 mRNA upstream 863630 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003541 mRNA downstream 56374 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003542 mRNA downstream 114059 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003539 mRNA downstream 121629 8965711 ~ 8977843 (+) True AMCG00003539
AMCG00003540 mRNA downstream 135518 8979600 ~ 8982021 (+) True AMCG00003540
AMCG00003544 mRNA downstream 231808 9075890 ~ 9106765 (+) True AMCG00003544
TU1569 other upstream 191423 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 2348922 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 411746 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 933426 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2646103 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2729649 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 4193355 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile