RNA id: TU2825


Basic Information

Item Value
RNA id TU2825
length 2044
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2329
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13507887 ~ 13509930 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtctttgtaatttaaataatttatttaccaCTAGAGCACCACAACATAATGTGTTACAATACATTGtaatgggtaaaaaaaaaacaacaacataaacaaaaacaaaacaaaatctttcaACTGGGTTGATTCCATGCTACCCTCTGAAATGTACTGTTGATAGGGAATTATGTTATATCCTACCCTCACTCTCTCAAATGCTATACTTTGTGACTGGTTCTTACTCAAGGGAAACAACAgctaagaaaaaactaaaaaacaaactgaaaacagggAAATGTCAACAGAAACAAGCATGAAAATACTATCAGTGCAATAATTTGAATCAAAGGATTTTATTCCTAATGAGGAAATACATTAGTGAAGGAAGGCATTCTGCAATGGGGTGGACATGGGAGCGTTTGACTCTCTGCTGCGCCCAGCGCAATCAAGCGAAGCTCTGAAACTCTTGGTGCTCATCTcgacataaaaacaaaatcagttttgGACAAAACATGTTGTTGCAATCACAGTACAAACTGTACGATTCTTTAAAGCAGcctttgctgtgtttgtttcacatGCGTACGTTGCAAAGAAGCTGCAATCTTTTGTCCAAGACTGTGAAATTTAGATATGCTGTTGGTAACTGTGCACCAATGTATAGCAAAATTAAACTTTGTAACTGAATTTGAAGGATTTTTAAACACGACACAATCATTTTGTTTGACAAGTACGTTTTCCATTCCAGACAGCTGAATGTCAATTGGAAATGGTGACAGTTGGAGAAAATATTAAAGACAAGATATTGGGTTCCTATCtcagaaacatatttaaaataaaaataatcaatatacatatatagagagagtaCTGATAGCACATTGCTTCTGGTGGATTGTTGTCACAATTCCTTATGATACCACCTCAAGATGCCTTACATATGGATCGTCAGACTTTCCGTCGGCCCCACTGCATCACTGTGTTAAATTTTAGCCAGAGTATTGAGTGTTAGTATGCCCTCGTGTTGACCTTGTCTTTTCTTACTGGCCTGAACATAAAAAACAGGTCTGAAATGTCTACCCCCCCAACCCTCCCTCTGGAGTAAGAATGAATTAATATACTGACAGTACTGACTGTCCACTACTCACCCAGCGATGACTAGTCACCACTCTAATGCTAGATTTTTAAATACGAAATTAGATTAAAAGAAAGTAACAAATTGCACTATTCCTGAAACAATGCAGGAAACAATAGACGATGCCTTTAAAATGATGTAATGAGCCttcaaaacataaattaaaaaacgtATTCTCCATTCTGTCGTACGCACTCCAACACATGACCAAATACACTCTGCACTTTTTCagctcttttaaattaaaatagcttTCAATTTCATAACAATTGAgcgttttgtgtttgtttgttgtgttgttgttttttaactgtagTGCTATTGAAGAAAGTAAAATCTGTTTTCAGTATGAATCGACAAGCGTTGTAGCAATGCATCTGATCGGTAGTTTTGAGATTTGAAGACtctaaaacagacatttcccTTTTAAACCGAACACATACGAAAACTGATTTtcttgttgaaaaacaaaaggtagTTTCAAAGAGGCAAAAAATAGTTACAGAGAGAAAAACTGGCATCAGACCTGGACAATTAAATCAGGGAAATGGCATTCttctatttatttcacatattgaCACTTAAAAGATTCTTCCAGTGTTTACAATTATGTCTCCTTTATATCACTAACATAGTTGATGGTTATTAACgccttcaaaatgcatttcttccGTTGGCCTTAACGACTCTTCCATACAGACTATGATTGTTGTTTTGAAACTCTTTCTCTTTTAACACTGATACACCCAGACATCCCAACTACAAACCCTTTTTAACTGCACTTACAAGACTTAACAATCATGTTGGATAGCTGTTCGATTTTGGGGGTTTTGCCGATGAAATACAGGATGGTAAGAGGTTCTAAGTCTTGGGAAACACAGCATGGTGACGCAGATGCTTCTGGGTTCATTGTATTGTACATACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2822 lncRNA upstream 22080 13485592 ~ 13485807 (+) True G2326
TU2819 lncRNA upstream 92731 13414931 ~ 13415156 (+) True G2323
TU2780 lncRNA upstream 253444 13247309 ~ 13254443 (+) True G2294
TU2760 lncRNA upstream 279530 13227235 ~ 13228357 (+) True G2281
TU2745 lncRNA upstream 405221 13102457 ~ 13102666 (+) True G2267
TU2826 lncRNA downstream 308 13510238 ~ 13510674 (+) True G2330
TU2827 lncRNA downstream 1605 13511535 ~ 13511829 (+) True G2331
TU2828 lncRNA downstream 2264 13512194 ~ 13512531 (+) True G2332
TU2829 lncRNA downstream 2670 13512600 ~ 13512998 (+) True G2333
TU2830 lncRNA downstream 4730 13514660 ~ 13515065 (+) True G2334
AMCG00003656 mRNA upstream 182665 13320203 ~ 13325222 (+) True AMCG00003656
AMCG00003654 mRNA upstream 261032 13242051 ~ 13246855 (+) True AMCG00003654
AMCG00003655 mRNA upstream 301048 13156234 ~ 13206839 (+) True AMCG00003655
AMCG00003653 mRNA upstream 415793 13091093 ~ 13092094 (+) True AMCG00003653
AMCG00003647 mRNA upstream 452706 13053429 ~ 13055181 (+) True AMCG00003647
AMCG00003666 mRNA downstream 227672 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003668 mRNA downstream 287349 13797279 ~ 13797599 (+) True AMCG00003668
AMCG00003670 mRNA downstream 499541 14009471 ~ 14013046 (+) True AMCG00003670
AMCG00003669 mRNA downstream 546521 14056451 ~ 14067694 (+) True AMCG00003669
AMCG00003673 mRNA downstream 582083 14092013 ~ 14190098 (+) True AMCG00003673
TU2754 other upstream 351260 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 465290 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 1930558 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 2016444 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3726985 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 908586 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 2525733 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4171887 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 4627825 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 4636730 18146660 ~ 18152314 (+) True G3108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU123391 False 2600 lncRNA 0.38 2 NC_053119.1 41741948 ~ 41745088 (-)
mexican tetra (Astyanax mexicanus) TU123391 False 3631 TUCP 0.40 2 NC_035906.1 18417609 ~ 18421263 (+)