RNA id: TU8944



Basic Information


Item Value
RNA id TU8944
length 311
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G7293
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42475576 ~ 42475886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggtccatattgataggatagcatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgattCGAAATCACTCAgtgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8939 lncRNA upstream 95615 42376625 ~ 42379961 (+) True G7288
TU8928 lncRNA upstream 109922 42364868 ~ 42365654 (+) True G7278
TU8918 lncRNA upstream 138933 42333425 ~ 42336643 (+) True G7272
TU8872 lncRNA upstream 385923 42087791 ~ 42089653 (+) True G7231
TU8861 lncRNA upstream 407851 42065497 ~ 42067725 (+) True G7221
TU9117 lncRNA downstream 759932 43235818 ~ 43237653 (+) True G7418
TU9148 lncRNA downstream 870464 43346350 ~ 43346959 (+) True G7441
TU9208 lncRNA downstream 1115864 43591750 ~ 43595078 (+) True G7485
TU9307 lncRNA downstream 1602459 44078345 ~ 44081355 (+) False G7569
TU9305 lncRNA downstream 1607212 44083098 ~ 44088037 (+) True G7569
AMCG00004308 mRNA upstream 120176 42350231 ~ 42355400 (+) True AMCG00004308
AMCG00004309 mRNA upstream 128494 42338514 ~ 42347082 (+) True AMCG00004309
AMCG00004305 mRNA upstream 215835 42220020 ~ 42259741 (+) True AMCG00004305
AMCG00004304 mRNA upstream 260827 42210430 ~ 42214749 (+) True AMCG00004304
AMCG00004303 mRNA upstream 377254 42089871 ~ 42098322 (+) True AMCG00004303
AMCG00004314 mRNA downstream 72454 42548340 ~ 42576558 (+) True AMCG00004314
AMCG00004315 mRNA downstream 115980 42591866 ~ 42634968 (+) True AMCG00004315
AMCG00004318 mRNA downstream 256930 42732816 ~ 42736569 (+) True AMCG00004318
AMCG00004321 mRNA downstream 451182 42927068 ~ 42975785 (+) True AMCG00004321
AMCG00004326 mRNA downstream 637798 43113684 ~ 43114271 (+) True AMCG00004326
TU8899 other upstream 259214 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 968345 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 5475418 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 5583830 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5701053 36774001 ~ 36774523 (+) True G6314
TU9000 other downstream 212893 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 3486124 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 5671002 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 6456564 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 7675378 50151264 ~ 50157719 (+) True G8377

Expression Profile