RNA id: AMCG00005838


Basic Information

Item Value
RNA id AMCG00005838
length 3811
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00005838
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10768791 ~ 10777146 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTCCCCACGCTCTGGTGTGTGTACCAGTGTGGTGCTGACggtgtgtccctgctgtccaCAGCTTCCTTGCCCTTTGTGATCATGACGCTGGTGTTCCGGCCGTTCAAGCGTGGCGTGGACTGCGATGACGACAGCATTCGCTACCCCTTCAAAAAGGACACCATCACACACGGCATGCTGGCCAGCGTCACCATCTCCTGCACCGTCCTCATCATTTCCTCGGGGGAGGCATACCTGGTGTACATTCAGCGGCTCCACTCCAATTCCCAGTTCAACCAGTACCTGGCGGCGCTGTACAAGGTGGTCGGCACCTTCCTGTTCGGGGGGGCGGTCAGTCAGTCGCTCACGGAGATCGCCAAATTCACCATCGGACGGCTGCGCCCCAACTTCCTGGCTGTGTGCGCCCCCGAAGTGTGCAAGGGCTACATGCTTGAGATCAACTGCACAGGACACCCACACAATGTCACGGAGTCCAGGTTGTCGTTCTACTCGGGCCACTCCTCCTTCGGGATGTACTGCATGCTGTTCCTGGcgctgTACGTGCAGGCTCGTCTGTCAGCGAAGTGGGCTCGCCTACTGCGGCCCACAATCCAGTACTTCCTGGTGGCGTTCGCGGTGTACGTGGGCTACACCCGGGTGTCCGACTACAAGCACCACTGGAGCGACGTGCTGGTCGGCCTCCTGCAGGGGGCGCTCATCGCCATTCTCATCGTGCGCTACGTGTCTGATTTCTTCAAGCAACGCCCCCCCCGCTGCCCTGCCCCGGTGGACACGGCCGAGTGTGAGGTGTTGGAGCGCAAGCCCAGCCTGCAGATCGCGGAAGCCGAGCACAACAACCATTACAGCTACCCGGGCGGAGTCTNNNNNNNNNNCGCGCCGTGGCACTCCTACTACAACCACTGGACTACACTGGACTGAACTGGCATAGACCCCCCACCGTGCTTGCCAAGCCAGAGCCCTGACGGACAATCAAGCACCAAGTGGAGCACGCACTAACACACTCGCATACCTGCACAACACACTTTTATCACCCCCTGTTTTTAATCCAGCTCATGCCCATCCTATAGACACACCTCTTCTCTCTGGGCATTGTGTACACGCgtgcatgtgtttgtatgtgcatGCCTCCAGACGTGTGTGGAAACGCACACGCATCAACTAGCCTGCTGGTCTtcgcctttttattttttccactttttgaTCGACTTATTAATTCATgagttattgtaattgttttggcttttttttttaaattgtgcttcATGATGATTTTCCTTGTAGTCATTCAGATGGGTCCAGGCGgatctgtgctttgtttttttactaaagaaaaagaaattaaagagGAGTGAGAGTGCACTGAGGAGTGACTTCAAGAGGACTAGACCCTGTAGCCAAATGGCCAAAAGAATTCCCTCACACAGGAAACGCCATCATTGCGATTGTGCCCATTATAAATTGGGCCGCCAGTGTGGACAGGCGACCCGGAGCCAGGGCCGATTgtttatggaaaataatttaTGGTTAAAATACTGCCCACCAGCTCCCTACCCAGACTCCTCTCTGGTTCATACCGATCCCCCCCCAACGTCActtggtatttttgttttaaaatgggggtgggggaagtTTCCTCACTCTGCATCGCTTTCCTGAGGAATGGCTGGGCTGGTGTTTGGGCAGTGTGGGCAGAGTGGCACACTGGGACAGCGGTcctgtgtgattttttttattttcctggctATCCATCAAGGATTCCCTCTGGGGGCGACAACATAGGGGTGGAGGGTGGTAACTCTCGTGATTTCAAATTGTGCTGGCGCAGCTCCGGGCAATGCGCATACAGGACAGAGGTGTTGGTTTCATGTGTAAAATCTGTGATTTGAAGCCGATCTGGTCGGATGGCAGGGTGCACTCCCAGTTTTAAATCGCATTCtaataaatcaattcataaataaaattaatatacgTTTTTAAAATGGGATTAAGCTTTTTCTCCTGATGCGATTGGTGTCAGGTCTTCATTCTCACAGCGCAGCCTGTCCTCAGAGGCAACACGAAGGGGAAAGCGATAGGAAGCACGTGTGTGCGCTAGTGTCACATGTGGTGTGCGTGTCCCGAGTTGTTCACTGCCTGTTGTCTTCTTTCATACAAACCTGCCCTCACTCCATGTACAGCAGCACCTCCTCCTGGCCAGTCAAGGGACTTCACATCACAGTAatcgtttgtttttttatttatttgttaatgggCCAAACATTTAAACCTTAAAATGATGCTGGAAAATAATCttgttttgctgctgctgctgcttctgttGTACATTGTATGGCACAGCCCCTATCATCGCCCTGCTGGCCACTATGAGAAGTGCAATTATGCGCAAATGTGTGATCACAATTAAGTCtgtatgtgtacatatgtatttgtgtgtgtgtatatacatatgtgtgtgtctgtgtaatatatacacacacatacacatgcataagCCGCtgttcagtgtatatatacacacctgtgtgtttgttattgtgGATGTCTGTGTGAGCCCAGGCAGGGGGGCTGCTCCCACATGCAGTATATATTGCTGTAAAATGTACTTGCTTGTGCTGTACTGCCTGATGAACAGAGGAGTCAAATGCTGCTCTTCATCCAGCTGCTCTCTGAAAGACCGCAGGCGATAAACCATGACACCAGCAAGATGGAGAGGACAGGGACTGAGACGGGGACAGAGATGAACAGAGAGTGGGATGGACAGGGACAGGCCCTGTGCCTTGGACAGGAGAGACTTAAAACACACACCATGCTCCCCATCTCCCTGCCTTTGACTTCTTAAATACTGCTCTCTCTTCATGGCACACATGTGTATGCTAGCGTCCAGGTGTGATTTTAGCTagcacatacatgtatatgcacACACGTTCAGATGTCCGCTGTGAGGCACTGTTGACCATGAAGGCTGTAAGCATCTCACTGCTCACCACTGCATCTCCACAcagcagtacagtgtgtgtgggaTTGTACTATATACAtagagaaatacacatgtaatgcCATTCTTTTACACTTTATATTGCATTAGCATGGCTGTGAAATGAGTAAGCACCTGTGCAAAGGGTTAAGtggattatttttgtgtgattgttcatttttaaagagacaAAAGAACTGGACTTTTTAAAGTTGTCTTGCTTTTGttatgctttgtgtgtttgcttgttcgttttgttatttgtgtgtgtgtgtttgtgtgtttggggggggggccTGGCCTGGATGGCGCTGGCTAGTAAGACACTGTATGggtttagttgttttgttttgatgttgtgAAACATTTGCAGAGTGTGATTTCATTCCAGTGTGTGCAGAGAAACGccatgtgtcagtgtttttttgtgtgtgtttgttttttgtttttttttcaatctacCAAGACAGGGCAAAAACCTGTGGAGGACATGAGAGAGGAGggtagagagaggagagggatgAGGGCAATCAGGCGACTGCAGGTGTGCTGAGGATTAGGGCGCTGTGGGAAACTGCCCAGCTCTCATGCTGTCTGGGTTTCACTGGCTGCGCTGCAGGGGATTGTGGGTCTCGCTGTCCTCGCAGAGAGCCGCAGTCAGGGCCTCTGACTTGTTAAAGGgagcagaaagagaaaaatacatgattttgttttaatttcacttatttttcatttcGTTGAGTGTCATTTTTGTGATTCTGTAAATTGGAACCtccttgtgtttttgtattgttgtatttttgcaataaaataaagctgtttttttccgCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01080 PLPP1_2_3; phosphatidate phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194798 lncRNA downstream 25943 10738544 ~ 10742848 (-) False AMCG00005839
TU194763 lncRNA downstream 74826 10690148 ~ 10693965 (-) True G154642
TU194688 lncRNA downstream 192289 10575970 ~ 10576502 (-) True G154575
TU194684 lncRNA downstream 223188 10543534 ~ 10545603 (-) True AMCG00005862
TU194465 lncRNA downstream 623860 10144483 ~ 10144931 (-) True G154400
TU194807 lncRNA upstream 25418 10802564 ~ 10818716 (-) True G154675
TU194827 lncRNA upstream 72472 10849618 ~ 10856409 (-) False AMCG00005831
TU194813 lncRNA upstream 133370 10910516 ~ 10912745 (-) False G154677
TU194875 lncRNA upstream 202412 10979558 ~ 10981714 (-) False G154715
TU194874 lncRNA upstream 202525 10979671 ~ 10982521 (-) True G154715
AMCG00005839 mRNA downstream 16677 10739660 ~ 10752114 (-) True AMCG00005839
AMCG00005805 mRNA downstream 103536 10659811 ~ 10665255 (-) True AMCG00005805
AMCG00005863 mRNA downstream 211036 10551424 ~ 10557755 (-) True AMCG00005863
AMCG00005862 mRNA downstream 217436 10545392 ~ 10551355 (-) False AMCG00005862
AMCG00005859 mRNA downstream 228745 10526146 ~ 10540046 (-) True AMCG00005859
AMCG00005828 mRNA upstream 11408 10788554 ~ 10806283 (-) True AMCG00005828
AMCG00005830 mRNA upstream 41724 10818870 ~ 10828071 (-) True AMCG00005830
AMCG00005829 mRNA upstream 52844 10829990 ~ 10837970 (-) True AMCG00005829
AMCG00005831 mRNA upstream 72369 10849515 ~ 10865796 (-) True AMCG00005831
AMCG00005827 mRNA upstream 90317 10867463 ~ 10869932 (-) True AMCG00005827
TU194621 other downstream 416009 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 417072 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1333851 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1676218 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2644106 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 66695 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 129149 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 133370 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 543591 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 559628 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_04362878_04366419.mRNA True 1641 mRNA 0.41 5 CI01000030 4362878 ~ 4367296 (+)