RNA id: AMCG00005831


Basic Information

Item Value
RNA id AMCG00005831
length 4649
RNA type mRNA
GC content 0.56
exon number 16
gene id AMCG00005831
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10849515 ~ 10865796 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGGAGGGGGCGGGGCCTCAGCATCGCCAGGAAGTGCGTGTCGTGTGCCCCGGAAGTGTATAGTGTGGAGGTCACAGTTACAGAGGGCTGCGAAGAGAGACGGAGTTATAGCTGCTGTTCATGTATTCAAGTTTAAACAGCTGGTTTTAACCTTACAGTAAACATGTCGGAAAGAAAAGTGTTAAACAAATACTACCCCCCAGACTTCGACCCATCGAAGATCCCCAAGCTTAAACTGCCTAAAGACCGGCAGTATGTTGTGCGACTGATGGCACCGTTTAACATGAGgtgtaaGACATGTGGGGAGTACATCTACAAGGGGAAGAAGTTCAATGCCCGTAAGGAGACGGTGCAGAATGAGCAGTACATGGGCCTGCCCATCTTTCGCTTCTACATAAAGTGCACCCGCTGCCTGGCCGAGATCACCTTTAAGACCGACCCTGAGAACACAGACTACGCCATGGAGCACGGAGCCACACGCAACTTCCAGGCGGAGAAGCTGAtcgaggaggaggagaagaagctgcagagggagagagaggaggaggagctcaACAACCCTATGAAGATCCTGGAGAACCGGACACGAGACTCCAAGCTGGAGATGGAAGTCCTGGAGAACCTGCAGGAGCTGAAGGAGCTGAACCAGCGCCAGGCCCGGGTGGACCACGAGGGGCTGCTGTCCCTGCACCGGGAGTTGGAGGAGCGGGAgcggaagagagagaaggaggaggacgAGAGAGAGACGCGGGAGATGTTGGAGCAGGCTCTGGTGAAGCGATTGAGGGACTCGGACTCGGACTCGGAGGAGGAGAGAGTGGCGGGGAGCGGGAGAGCTACCCTGCACAGTGCCGACAGACCCACAGACATCCTCACCACGGACAGACAAGTCGACACACTGGGACAGGCCCCCAGCTCCTCCACAGTGAAGCGCCCCCGAGTGGAGAGCTGGGAGCGCAGCGTCGGGGGGCTGGGCGGGGGTGCGCTGGGAGCCCTGGTGGTGAAGAAGAAGCCCCCCCCCACGACACAGCCCCCTCAggccccagcagcagcagGATCTCACACCCTGAAGGCTGCCACACCCCCTGCTGCCCAGCCACCAGTCACAGCACAGAACGGCTCCTCGCTCAGCCTGCTGGGGGCCTATTCCGACAGCGAGGACAGCGAATGAGAGAGCTGCGTGGCCAAGGAAGactatatatgttttgtacctttttattgtatttacctTTTACTGAGCAGGGGACCTTAAATCAAGTGCTGTAATACAACTAGTTTGAACACCATCGCCCTGTGCAGTACAGATGAGCTGCCAACTGTGCCATGGGGGTGGGAGGGCGGTGTCAGGACTGTGGTCAGTGGCAGCTTGAACACCAGTAATAAACACAGTCAGACCTTACCTTCTTGTACggctgaagtgtgtgtgtgtgtgtttgttattttttttgtatgtactgAAGCAGTGTGAGGTCTCCAGGGTGAGTGAGTCACTGCAGGGCTGAGAGGATGTGTGTGtcacagagagagtgagtgcaGTGTATGAGAGATGCTCAGTTTGTGAGGGAAAGTATCCTGTGTTGTTTGTCGTTTTCTATCAGTCTGACTTCATCCCCCTTCCTTTCACTCCTTCTTTCTCGCTGCTTGTCCCTCTCTCACtcaattcctttttctttccctctgtcCCGCTCTCTTCACTTCTCTGtggcctctttctctctcttatcTCGCTCTTTCCGTCTCTCACAGTCGCCCTGACCTTTCCGCTTCTGATGGAGGTGGGGGGAGTATGTGTGTATGGAGGGGGAAGGGTGGTAGGAGAGGGGGATTTAAGGTATGACTTCATTCCAATTCTGTATCCCTGGGGATCTCaaacagggagagggagggaaagaggagCCGAGATCACGGATACACAGGTCTTGTTCGCTGTCCTGCCGTCTGATTTCTACTTTGCAAGTGTGTGCGTCACTGATTGTGACTGTAGGTGTAAATTAGAGGCACAGATTCCCCCCACTCCCCCGCCCACACTTGTCTTTGTGAGTGACACAACTGTTAATTAAAGTATGCAAATGAGCACCAGGAGAGACgactgaatcttttttttttggtaggtTAATTTAAGAGAATTAATTGCCAGCACGGTGTGAATTCGCCCTcttttgtgtaaattggaatcaaGGGGCCGGGCAACAAGCTGCTGGGCACAGCAGGTGCGATCCGTCTCGGCTTCGATACACACTGCTgtcttttatGCCCTGCTGAGGTCTTGGGTCTCAGCGCCCCCTGATGGCCAAGTGGCTGAAGGACTACCTGAGCTTTGGTGGGCGGCGCGTCCCCCCCCAGCCGCCCAAGCCCGACTACACGGAGAGCGAGATCCTGAAGGCCTACCGCGCGCAGAAGAACCTGGACTTCGAGGACCCGTACGAGGACTCGGAGAACCGCACCCGCGCCGACCCCGCCCTGGCCGACCTGCAGAACCAGAACCACAGCCAGGGCTGCCCGGGCCTGGGCTCCCCGCTGAAGTCGGCCAGCCTGGACTTGAAGTTCGTCTCTCCCAAACACCGCCTCATCAAGGTGGACTCGCAGGACATGGGCCGCAGCAAGATCCTGCTCAGCGCCGTGAGCCCGGACGAGTCGCCCCCCAGCAGGACTGAGCCGGAGATAAGAAAGCTGTCGCACTTGGCCCACAGCCAGGCAACACTGCTGGGCCCCGTGCTGTCTCTGTATgcgGTGGTCCCCTCTGCCCCGGCAGTGGGGGACACAGATTACTCGGACCCGTTCGACGCCCGCAGTGAGACGCGGGGGACGGGGGGATGGGGCGAGGGGCAAGCAGAGCCCCCCCCAGAGAACAACGGCTACATGGAGCCCTACGAGGCCCAGCGCGTCATCACGGagTTGCAGAGGGGCCCGGCGGGGGGGACCCGGACGCGTGGGGGGGTGCAGCTGTACGACACCCCCTATGAGGAGCGGGAGCGGCGCCGGGGCGGGGGCCAGCGGGGGCGGGGCCGCAGGGCCGAGCCTGGGGGGGGGCGGGAGAGCAGACTGCCCCAGGACGATGAGAGACCGGCGGACGAGTACGACCAGCCCTGGGAGTGGAAGAAGGACCACATCTCCAAAGCCTTTGCAGTAGAGTTTAGAGAGTTTGCAGACCTGCCCTGGCCCCCCCCTGTGGGCCAGCTCGATGAGGACCCCTCCCTCAGGGACCAAGtgcagTTTGATGGGGCTGAGTGGGACCGCTCCTCACCCCCCCCGGACCGCCTGCGCCCTCCCCGTGGCAGCCCCCTGGGAGGTGGGTCCAAGCTCCGCAGGCCCACCCCTGATGCGCACGGACtgctgggggagagagtggaCCCCAGCCTGCCTCTGGAGAGACAGGTGTGGTACCACGGTTCGCTGAGCCGGTCGGAGGCGGAGTCTCTGCTGACGCTGTGTAAGGAGTGCAGCTACCTGGTGAGGAACAGCGAGACCAGCCACTCGGACTACTCCCTCTCCCTGAGgAGCTGCCAGGGGTTCATGCATATGAAGTTCACCCTGTCCAAGGAGGGCAAGTACGTCCTGGGTCAGAACAGCCCCCCGTTTGACACCATCCCTGAGGTCATCCACTTCTACACCACCCACAAGCTGCCAATCAAGGGCGCTGAGCACCTCTCCCTGCTGTTCCCCGTGCTGGTACAGACGCTCTGATTGGATGGGAGCGGATTGGGGCTTAGGCAGGGTGTAGTTACAGACGCTCCCATTGGCCTACAACTTTCTGTTACCAACGATCTGATTGGATGGGATTTGTTGATTGGACCACAGAACTCTCTCACAGTGGTGCTGTAAAAGATCTCCCCCTGATTGGACCAGTGTGTGCTCGTagtacccccccccaccccaatgcACCCCTTTCTTCTGGTCTGGTACAGAGGTTGTGATTGGATTGGACTAACCAAATATATGTTGCCCTGATTGGAGGCCTTTCTGTAACTGTCATTGTGATTGGACCATGGTGACTTTTCTTTGCCCCGGACTCTGATTGGACAATGCCTTAACCCCCCACAGCTGCTAGGAATTTTtcatgaaataatgaaattggACCATTGTCTCTACATCTCCGATTGGCCTGTTGTTCCGCCGGTGACGTTACAAAGCGTCCGATTGGTCTGTGACATGCCTGCTGATCTAACGAGCAATCTGATTGGATTCGATTTTGTGCTTTCCCAGAGCACTTTTATTGGACCTTTGAGTATCTGTAACCCTGGTGCTGGAGTTTTTATTGGTTCCTACACTTTTTGGGAACAAGGCTTCTGATTGGCTGTTCTGTCCTGCAGGCTCCTCCCAGTATATAAAGGGGTTGGGTCTCTTCTCTGAGCAAGGCTTTTGATTGGACTACAACAGGACCCACCCACAGCCCCTAATCCGTCACTGACAGGACATTATCACTGGCAAACCTATACGGAGAGACAGGGACTGGCATTGCTGAGTGCTATTGACAATGAGGAGgacaatgtaattattattcttattatcaTTACAGTGATTACTTATTTAGTGTGTTTTTCCACTTGTGCTAAGACAATAAACAGGTTGATTAACCAGTGCGTGCTGTATGTGTGAGCGTGAGCTGATGGAGATGGACCGTAACACACAGTCTGCAACACACAGCAG

Function

GO: NA

KEGG:

id description
K23697 SHB_D_E_F; SH2 domain-containing adapter protein B/D/E/F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194807 lncRNA downstream 30799 10802564 ~ 10818716 (-) True G154675
TU194798 lncRNA downstream 106667 10738544 ~ 10742848 (-) False AMCG00005839
TU194763 lncRNA downstream 155550 10690148 ~ 10693965 (-) True G154642
TU194688 lncRNA downstream 273013 10575970 ~ 10576502 (-) True G154575
TU194684 lncRNA downstream 303912 10543534 ~ 10545603 (-) True AMCG00005862
TU194813 lncRNA upstream 44720 10910516 ~ 10912745 (-) False G154677
TU194875 lncRNA upstream 113762 10979558 ~ 10981714 (-) False G154715
TU194874 lncRNA upstream 113875 10979671 ~ 10982521 (-) True G154715
TU194873 lncRNA upstream 116169 10981965 ~ 10983480 (-) False G154715
TU194891 lncRNA upstream 131981 10997777 ~ 10999382 (-) True G154723
AMCG00005829 mRNA downstream 11545 10829990 ~ 10837970 (-) True AMCG00005829
AMCG00005830 mRNA downstream 21444 10818870 ~ 10828071 (-) True AMCG00005830
AMCG00005828 mRNA downstream 43232 10788554 ~ 10806283 (-) True AMCG00005828
AMCG00005838 mRNA downstream 72369 10768791 ~ 10777146 (-) True AMCG00005838
AMCG00005839 mRNA downstream 97401 10739660 ~ 10752114 (-) True AMCG00005839
AMCG00005827 mRNA upstream 1667 10867463 ~ 10869932 (-) True AMCG00005827
AMCG00005832 mRNA upstream 4806 10870602 ~ 10879010 (-) True AMCG00005832
AMCG00005872 mRNA upstream 24761 10890557 ~ 10892302 (-) True AMCG00005872
AMCG00005871 mRNA upstream 31211 10897007 ~ 10902283 (-) True AMCG00005871
AMCG00005870 mRNA upstream 47539 10913335 ~ 10917815 (-) True AMCG00005870
TU194621 other downstream 496733 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 497796 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1414575 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1756942 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2724830 8091748 ~ 8124685 (-) True G153806
TU194821 other upstream 40499 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 44720 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 454941 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 470978 11336774 ~ 11339114 (-) False AMCG00005877
TU195020 other upstream 483449 11349245 ~ 11354633 (-) False AMCG00005879

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031609 False 1663 mRNA 0.45 8 NC_007113.7 52049239 ~ 52063440 (+)