RNA id: AMCG00007205


Basic Information

Item Value
RNA id AMCG00007205
length 5881
RNA type mRNA
GC content 0.56
exon number 16
gene id AMCG00007205
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7408648 ~ 7423202 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCAGCCGACCATGAAAGCTGTGGTTGGACTGGCCCCGCGGTGGGAACGGGTCACCAACTCGCCGAGGAGCGCCGGAGCGCTGTGAACTCGTCAGGCCGAGGCGGGCTCGGGCGCGTGGGTGTGGCTGCGCCACGCTGTGcagtgcgCCTATTAAAAGGCCCTGGTCAGGCCTGTGTGAGCTGCCGGGTCGGGGGTGGGACAGCCCTGAGTCACGCTGTGTTCCTGCCAGGCTGGGGGGGCTGGGGTAGAGAACGGCATGTGCCCTTGGGGAGGGAAGTCATCCCTCGACTCACTATCTGCTCCTCACCCTGTATCTCCGGCACTGCAGCCCGCTGCCAGACGTGTCTCTCCTCTAACAGACGCTCTTCTCTGCCTGTAGAGTACGGCGGCTCGTCCACCATGCGATACTCCACCTACACACCGGGCTTCAGCTCCAAGTCCCAGATGTACACGTCCAGCCGGGCGGTCGCGCTCCTCTCCATGGCCATCTTCAGGAGCTGCAGAGGCGGGGGATTTAACTCTTTTATTAATCTCTTCACTGTGGAAAGGGCGTCGCTTCCCCAGCACTTGGACATGGCTGGAATTGCAGCCTCAACACCAGAAAGCAGTAGCTGGGACAAACCCACGAGGCACGGCAGGCCGATCCCACGAGACGGGGCCGGGCCGGACCCTCGGCTCCACATTCCTCACGGCCCTCGGAACGGCACGGAGAACAtctgtttaatttctttATCTGGCAGGAACAAGACTAATGCCATCCATCCCAAATCCAACAACACCGGGACTGTATACCTGCACTGGCCTGGAACCACAACCTGTCACAAGATATTGATGTTCATGTTCGCACTCTTTGCCCCAGACAAACCTCTGCCCTCTCCCCGAGTGTCTGGGCTCGGGCTCTGTGGGTCTgCGCCGCGGGGGTCCCAGTACGGCAACGGCACAATGCGCGGTGGGGGCGGCTTCTCGTCCCGCTCGGCCGTGGACTTCGGGCAGCGGCAGAAGGTCAGCATGGGGGGGAGCGGCATGATGCAGCAGGGCGGCTACCAGACCCGGCAGACGGTGATGCGCTCCATGAGCCGGGCGGGaggcgggggcgggggcgggggcaggGGGCCAGACCTGGACACGATGTCCATGCGCTCCCTGCAGCTGCGCAGCCTGCCCCCCCAAGTCGCCGCGGTCAACAACTGGAGGGACGACAGTGAGGGCAGCCTGGTCTCGGACCGGGATGCCACCGTGAACCGCCACTCCATGTACAGCACAGTCACCGACGGCGGGTTCTATGGCGCCGGGGGTGGGGCGGCCGTGCGGCAGGTGGGCGGCTCTGTGTCCACCATGCGCCGGTCCCTGAGTGGCACACTGAGCCGGGCGGCTGGTGGGGAGATGATCGTGGCCCAGGAGGAGTTGCCCCCACAGCAGTCCTACAAGGGCCCGGCTTACCGCACCATCAGCCGCATCAACCAGCGCAGGACCCAGACCAGCTCGGCGATGGCGGGCGGCGGAGGGATGTACCAGGCGGGGTCCATGAtggggggcggtgggggggtgTACCAGTCATCCTCCGGGGGCCAGATGCTTGTGAATTCCATCCCCCGGGCCATGTCTGTGAAGAGCCTGCACAGCGTGGGGAGGGGCATGGACGTGTTCGATGGAGAGATGGACATGATGGGCATGAACGAGGGGTTCACCAACCTGACCATGCCCACGGCCATCAGTTACCTGTCCCAGCCGGACCCGGAGATGCAAGTGCTGGGCTCAGCCTTCATACAGCACGAGTGCTACCACAACAACGACGCCAAGAACCAGGTGCGTCTCATGAAGGGCATCCCGGCGCTGGTGAAGCTGTTCAACAGTGAGAACCAGGAGGTGCAGCGCTACACCACGGGCGCCATGCGCAACATCATCTACGAGAACATGGACAACAAGACGGGGCTGATCGAGGCGGGCGGCGACAGTCTGAAGGAGAAGCTGGCGAGGGACACCCTGGCCGACCTGACCGAGCACATCCTGATCCCGCTGTCCTCGGACTCGGTCACCCAGAGCGCCTCGGAGACTGAGATCTTCCTCAACACCACGGGCTGCCTCAGGAACCTGAGCTCGGTGAACAGCCGGACCCGGCAGCAGATGCGGGAGACGACCGGGCTGGTGGACGCGCTGGTGGAGTACATCCAGAACTCCCTGGAGAACGGGAAGGCCGAGGAGAAGGGCATGGAGAACGCGGTCTGTGTGCTGAGGAACCTGTCCTACCAGCTGTACGGGGAGCTGCCCCCCTCGACCATGGCACGCCTGGAGGGCCCGAGCCGGGGGCAGGGGGCTGGGGGCAAGGGCGACGCCATCGGGTGCTTCACCCCACAGAGCAAGAAGGCCAAAGAGAGGCAGAACCAGGACCTGTCCACGTTCACTGAGGTGATCAAGGACCCCCAGGGGCAGCAGCTGCTGTGGCACCCCCAGGTGGTGGGGCTGTACAATCGCGTGCTGCAGCGCTGCGAGATCAACACCACGACGCGCGAGGCGGGGGCCGGGGCGCTGCAGAACATCACCGCCGGGGAGAAGAGGtgggCATCTGTGCTCAGCAAGGTGGCTCTGGAGCAGGAGAGGATGCTGCCCGTGGTCCTGGACCTCCTGAGGACCAACAACGACCCGGAGCTGCGCTCTCTCACCGGCTTCATGAAGAACCTGTCCCGCCACGCCAAGAACAAGAACGACATGGCAACCAAGGTGGTGAACAACCTGATCAGCAAGCTGCCCACCGACGGGCACCAGAAGACGCCCTCCAGCGATGTGGTGGTGAACATCTGCGGTGTCCTTAACAACCTGGTGACCTGCAGCATCGTGGCCGCCCGAGACATCACCTTCTTCGACGGTCTGCAGAAACTGGTGGCCATCAAGAACTCCTTTGACAGCAACCCTGACGAGCAGAAGGCAGCGAAGGCCGCGTCCACCGTGCTGTCCAACATGTTCCAGTACAAGAAGCTGCACTCGGACTACAAGCAGAAAGGATTCACGAAGCACGACTTCACGGACAGCAGCTTTTAATCCCGACCTGCggcacctgtttttttttttttttgttagttttcttgttcattttttttatactaaAACTACTGAATTATTTCATCACCTGCTTTTACTCCGACTCTGACTGGCCTGCGGCGCGTTGTGGACTCAATGGACGACCCTCTCCCAGCCTCCTGAGGACGCGGTGCATTAACCctgtctgcccccccccccatctgtGTCATTCACcaagaaaatcaatcaatcaatcagtcaagaATCAGCGGCTGCCACAGCTGCCGAGAACCCCTACTTTACTGCTGTGTCTGTGGCCATGGATGCAAAGGATGGGGATGAGACGGAGGGCCGTGTCAGGGACTGTGAGACCATCCTTATGACAGAACTGTAAATAAAGATTTATAGAcgtcaccccccccccatctgAAGACCAATCATCTCTGATCCGACACCGGAAACCTGCCATGTGGGCCTCCTGGCAGCTCAGCGCTGTTTGCTGAACAGATAAGACCTGGACTCTGATCCCTCGGGGGCTCGGGGGCGGCGGCTCTGATTCAGGCGGAGGCCGATGTGTGCCGGTTCATGCCGctgatttgctttgtttgtatttttgaaagattGTATGTGAGGTTggatatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataatatatataggtaGATAGAGTTCAGCTTGGCTTATACAGACTGAGGGCTGTAAGCCTTGGGGGGGAAGATTCCTCTCTGTGCCAATAACCTGCGATTGTTCTGCGATCTCCTTTGGTGGACGATGAAAATCCGCTCTTGATAGTGAGATGTGGATCAGGCCGTATCCTGTCCCATTAACCCAGTTTGGCTAACTCCCCTCGCTGCAGAGTCGTTGAGCTGCTGCCGCTGGGTGTGGAAACTCAAAAAAGGAAAGATGGCTGTAATCGGAACTACAACTGCCTGCGGTGCCACCCTGTGGAGAAACAGTGTAACGACATCCTTTCAATAGacttttgatatatatatatatttgttttaattgcacagAAGATGTTTAAACGGTTCCATTGCAGGCAAACAATTAGACGTGCTGCTTTACTCACTGCTTAGGACTGTTCCTAGTGACACTATATCAGAGTCCGTTTGAAAAGATTGTGCCTCTTGAGAGAGCGTGCGATGGTGAAACGCTGGAGATCAGATCCCACTCTGGATTAAGGGCTCCCTGCTCTCTTTAGTGAGAGTGTGCCTTACCAGCCTCAGGGCTTCAAAATACCATGAAtcagaaaggaagaaaagataaatagtttaaatgagATTAAATGAGTTTTGGACTTGTCTCAGGATGGGAGGTGGGTTCTGGCTAGGTGGTCAGACCCAATAAACGCCGCACAGTGACCTCACGGGGTGTCAACCCATCCGCACCGTAGTCACGACACACTGGACACCGTGCACAGCCGGTACGAGATGATGGTGTCTTGCAATGGTTGTTACTGGGTTCATGCAAGACACAAAAAATGGAGACGAGAAATATCTGCCCTTGGAATGAATGTAGGGTCCGGTTATCTTGTCTTGTTTTTACGTTTATCGTCACTGTAGACACTTCACTACACACCCCTGCACTGGGACtggcctctcctctcctctcctgctgAAAACACTACTGATGCTCTACTTGTATAAACTTCTATTTTTATACGTATATAGTTTGtgccaaaatgttttgttgttttatttttttcttttaagggcAAATGTTTGTAAAATGGGTGTTAATTTTTGTATAGATTTAAGaatcctgttgtttttgtaggttaatgcaaatagaaaaacaaagagacaataaaatcataaataaatatatatataagaataagTATGAGGAATTCAGGCAATAGAGAAGTGATTGTTTCATAGGAGTTTCACTCTGATACGCTCTTGTGTGTGATTACACTTAAATTAGCATAAGTGCCAAGAAGACCTCGAGACCTCCTGTGGCTCCTGgttgatttgtgtgtttcttggcGTGAGTCTCAAACAGCAGCCTGGAGGGAAAGTCGTCGTTTAATATTGGACTGATAAATCGGAGGCAAGCAAACGTGTTGAATGAGATTTGGGGCTCTGGCGGGGGACCCTGGCGCTGTGGACAGCAGACGTCTGTCTCTGGACTGTCCTGCCCTGAGAGGAGCGTCTTCAAAATGCGAGCTGTGGCTTCAGGATGCGACTCATTCACGCTGTGTACTTCGCAAAGTAATGTCATTTAACTTAATGCTAATCAATGTGTGACTTTCTATTGCTCACTGTTTTCAACCGGGGGCTTCAGGCCATAACGGAGGGCAGACGTTGTTATGGGCTTCATGCAGGCAACTGGAGTCAATCTATAGCAAAATAGTTTGATGGGCTTGCTGTTCCCCAGTCCTGCCCAACACAGGGAGAGTCTTGCGCTACGACTGGTTGCTTAATTACACCATTggattttcaattaaacaattaattaacaagCTGGAATAATGTGGATTGCAAGGGGCCCGGTGGTGCCGACTGGGTTGTGCCGCCTGTAGGAGCCCATCGCAGGAGGCCCGCCCTGGTACCGCTCTCTTCCGTTTGTGGTGCCAGCTGAGCTCTGAATCGCAGGACTGGCACTCAGCCGACCCGACATCGCCGTCACTGGGCCTCGTTCTTGAGTTGTTCTACGCTGGCGGTGCATCAGTCAGCAATGGATTTCAGCTGACCTGCAGTGCTCGGCTGGGGCGGCGGCTGAAAACCACGTCCCCAcatctgtgtgtccctctgtcctgCTGTGTTGTTGTACAATATGGATGTAAcctttaacaataaataaacaattgtgtTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27417 lncRNA downstream 80906 7324424 ~ 7327742 (-) True AMCG00007201
TU27327 lncRNA downstream 703986 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 719539 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 763770 6638997 ~ 6644878 (-) True G21787
TU27300 lncRNA downstream 770589 6635583 ~ 6638059 (-) False G21786
TU27647 lncRNA upstream 330212 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 477600 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 490402 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 558146 7981348 ~ 7984510 (-) True G22111
TU27820 lncRNA upstream 828825 8252027 ~ 8252664 (-) True G22191
AMCG00007206 mRNA downstream 11847 7384420 ~ 7396801 (-) True AMCG00007206
AMCG00007201 mRNA downstream 66307 7327508 ~ 7342341 (-) False AMCG00007201
AMCG00007202 mRNA downstream 84748 7319188 ~ 7323900 (-) True AMCG00007202
AMCG00007200 mRNA downstream 91426 7309756 ~ 7317222 (-) True AMCG00007200
AMCG00007199 mRNA downstream 101050 7283723 ~ 7307598 (-) True AMCG00007199
AMCG00007207 mRNA upstream 5517 7428719 ~ 7429020 (-) True AMCG00007207
AMCG00007204 mRNA upstream 37123 7460325 ~ 7468151 (-) True AMCG00007204
AMCG00007211 mRNA upstream 137508 7560710 ~ 7561451 (-) True AMCG00007211
AMCG00007210 mRNA upstream 150100 7573302 ~ 7580896 (-) True AMCG00007210
AMCG00007214 mRNA upstream 161584 7584786 ~ 7591300 (-) True AMCG00007214
TU27173 other downstream 1394479 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1588364 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2351242 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2359128 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 2359809 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 76245 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 969994 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2764112 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 5928315 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6522441 13945643 ~ 13946065 (-) True G22931

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067819 False 3173 mRNA 0.50 13 NC_007118.7 32928096 ~ 32980017 (-)