RNA id: AMCG00008881


Basic Information

Item Value
RNA id AMCG00008881
length 2021
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00008881
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13866654 ~ 13881491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGAGAGGAGAAATACACAGCCCCTGAGGTGTAAGCTAGTTTTGGTAGGAGACGTCCAATGCGGGAAGACGGCGATGTTGCAAGTGCTAGCCAAGGACTGCTACCCCGAGACTTACGTGCCGACGGTGTTTGAGAACTACACGGCCTgcctggagctggaggagcagcGTGTGGAGCTCAGTCTCTGGGACACGTCAGGCTCACCGTACTATGACAATGTGCGCCCCCTGTGCTACAGCGACTCCGACGCCGTCCTGCTGTGCTTCGACATCAGCCGGCCAGACACCATTGACAGCGCACTGAAGAAGTGGAAGACCGAGATCCTGGATTACTGCCCCAGCACTCGCATCCTGCTGATTGGCTGCAAGACAGACCTGCGTACTGATGTATGCACCCTGATGGAGCTGTCCAATCAGAAGCAGACGCCCATCTCCCATGAGCAGGGTTCGGCGATGGCCAAGCAGCTGGGCGCAGAGGCTTATTTAGAGTGCTCAGCCTTCACGTCTGAGAAGAGCATCCACAGTGTGTTCCGCACGGCCGCGCTGGCCTGCATGAACAAACTGCAGCCGGCGGCCAAACCCAGCCCCACACGTCGCCTGTCCAAGAGGTTACTGCACCTGCCCAGCCGCTCTGAGCTGCTCACTTCCACCTTCAAGAAGGAGAAGGCCAAGAGCTGCTCTGTCATGTGAGAGGGGTGGAGGGTGGGGTGCTGTCATCAGCAGAGCTGTGCCGAGCCACGCCAGGCCCGGCCACGCcatgggagagggggaggggtggagCGCACACTTGCAACGGGACGCAGGACTCCTCCACCCTCGGCATCCACCTCCGTCCCCTCCTGTTGCCGGGCAGCCCTGGGCCTGCAACTCCCAACCCCTTCCTTCCTCTCCCAGCTGCCCTTCCCTAATCCTACTCCTGCCTGAACTAACCCCTTGCCCCACAGCACCATGCAGCGCCCGACTTCGAGATCCTGCTACAGTGTCTGTGCACATCAGCCAATGAACTTAGTTCCCTGATCCACTGAATTCATTCATTCTCTCCTGTACATTGAGTTAGAACTCAAAGGTACAGTCTGCTGAGGTATATTTTATGGCTTTGTgcagcttttacattttttgtgtaggGGTGGGGGTTAGACATGAATCTGAAGTGCAAGGCTTCTGTGAAAATGGTGAGAGAATGAAACAACAACCGCTGACCGTTTAAAACAAGGGAGTTTCTCCAACACACGTCTTGCAGTTAAAGAGTCTGGAGCAGTGCATGGGGCTTCATCCTTTGGATGGCTGGGGTGGGAGTAGGGGAAGGGGGCAACTTTGGAATTGGctggtgtgcatgtttataCAAAACCAACTTCTCCATCATATATACAGAATGTGCTTTATAGGGTGTGTTGAAGTGGGGGGGAGGGTGCAAGGTCATATCTAAAATGGCTGCCTTGAGGTTTTTAACGGATACCTCTGCGGCGGCGGGGGggggaaatatatttaaaaaaaaaaaaaaaaaggatggtGAGGTGGCAGGGACTGCAGGCTTATCCACCTCTGCTAGTGTGCTGGGGGGGCAGGGATGCAGTGCTGAGTTATGCTTACCTACATCTACAGATCATAGTCAAAACTGCCCCCAAAGCaacaatatttaactttttacacCCCCCCCCAGTTTAACCCTGCAGAGGATCAGAGTAGGAAGATGTTCAGTTGTTTCTATTGTATCTTCATGCCTGTgcaggggggtgtggggggggttctgCAGAGTAATGCATCTGCAGCTATTAGGGTGCTGTCTGCGTGAATGAACTAAGATGCTGAACATGTGGGGACACttaattttgaaagcattgcTCAAccttagtttatttatttgttttataccaAGGCTTTCATTTACCATGaccattttaaatgcagattcattttctcctgctgtatttatttgttgttgtggtgtgtgtgtgtttgttatgttatttaaaatgtatcaaataaagGCGCAATAAATTcctggaggggaggggggg

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07531 RND1; Rho family GTPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65263 lncRNA downstream 36339 13823113 ~ 13830315 (-) True G52157
TU65235 lncRNA downstream 89725 13771560 ~ 13776929 (-) True G52131
TU65103 lncRNA downstream 410802 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA downstream 427028 13438088 ~ 13439626 (-) True G52041
TU65035 lncRNA downstream 557229 13307422 ~ 13309425 (-) False G51974
TU65338 lncRNA upstream 124236 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 245748 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 390483 14271974 ~ 14275087 (-) True G52296
TU65464 lncRNA upstream 479442 14360933 ~ 14365179 (-) True G52314
TU65458 lncRNA upstream 492100 14373591 ~ 14378330 (-) True G52308
AMCG00008882 mRNA downstream 26728 13831207 ~ 13839926 (-) True AMCG00008882
AMCG00008879 mRNA downstream 95264 13737882 ~ 13771390 (-) True AMCG00008879
AMCG00008878 mRNA downstream 132616 13720710 ~ 13734038 (-) True AMCG00008878
AMCG00008872 mRNA downstream 223279 13638657 ~ 13643375 (-) True AMCG00008872
AMCG00008873 mRNA downstream 257706 13585087 ~ 13608948 (-) True AMCG00008873
AMCG00008887 mRNA upstream 9789 13891280 ~ 13897417 (-) True AMCG00008887
AMCG00008891 mRNA upstream 135859 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008890 mRNA upstream 160282 14041773 ~ 14042907 (-) True AMCG00008890
AMCG00008904 mRNA upstream 503078 14384569 ~ 14389388 (-) True AMCG00008904
AMCG00008907 mRNA upstream 508698 14390189 ~ 14393018 (-) True AMCG00008907
TU65198 other downstream 179917 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 541427 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 557229 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 604832 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 768720 13090537 ~ 13097934 (-) True AMCG00008845
TU65308 other upstream 56960 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 62507 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 1603891 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1955498 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1960173 15841664 ~ 15851809 (-) False AMCG00008964

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_10093069_10104108.mRNA True 2646 mRNA 0.41 6 CI01000001 10092902 ~ 10105699 (+)