RNA id: CI01000001_10093069_10104108.mRNA


Basic Information

Item Value
RNA id CI01000001_10093069_10104108.mRNA
length 2646
RNA type mRNA
GC content 0.41
exon number 6
gene id CI01000001_10093069_10104108
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10092902 ~ 10105699 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATAAACCCATAGTCCATAGTTAAATCACTTCGGCTGCGGGAAATTCTCAGTGTTGTGTGTAATCACCACAGAAACCGTTGTGCACTCGCATATCCTCGTGTCCGTCTGTTTTAGACGTTTTTGTTTTTGTTTATTTTATTCTGTTAAAAGATATCGTAAAACCATGAAAGAGAGAAGAAACGCACAGCCACTGGTGGTCAGATGTAAACTGGTGCTGGTTGGGGATGTTCAATGCGGGAAAACTGCGATGTTACAGGTTTTGGCGAAGGATTGTTATCCGGAGACGTATGTGCCCACAGTATTTGAGAACTACACAGCCTGTCTGGAGCTTGATGACCAACGTGTTGAATTGAGTTTATGGGACACGTCAGGATCTCCATACTATGATAATGTGAGACCCCTCTGCTACAGTGACTCCGATGCAGTGCTCCTCTGTTTTGACATCAGTCGCCCAGATATCTTTGACAGTGGACTTAAGAAGTGGAGGGCTGAGATCCTCGACTTCTGCCCCAGTACTCGTATTCTCCTCGTTGGGTGCAAGACAGACCTTCGGACGGATGTCTGCACACTGATGGAACTGTCCAATCAGAAACAAACACCCATCACTCATGAGCAGGGCTCTGCCATGGCCAAACAATTGGGTGCCGAGGCTTATCTGGAGTGTTCAGCCTTCACCTCCGAGAAGAGCATCCACAGCGTGTTCCGCACAGCTGCGCTGGCTTGCATTAACAAGCTGCAGCCACTTGCCAAGCCCAGCCCGACCCGTCGGCTGTCCAAACGCCTGCTGCACCTGCCCAGCAAGTCCGAGCTCATCTCCTCCACCTTCAAGAAGGAGAAGGCCAAGAGTTGCTCTGTAATAAACACCTTTCAGAACAAGTGGACACCTCGCTGTCCTCCTTGTCCTGAGCACTTCAACAGTGCATATGTATTTTCACTACTGTATCTTGCTTTTTCAAATGAGATTCGATCATCAGCCGTCATCTATTCATTCCTTGTTATCGAGAGATTTGCTGTCATTGTTCCAGTTGAAGCTCGGAATGATTCAACTTAGTAAATAGGAAACAGATGTTTTAAAAGAGGTTTCAATGTTCAATGTAAGCTATTCGGTGTATAATGCGAGATCTCTAGTGTAAGATTCAAAACACATACCTACAGTATGCACTAATGACTAAATCTGAGGGAACCGATCCAAGGGAATTGTGAAGCTGAGGCTGTTGTGGAGATGTGCGCAAGGCCTGGGTCATATAGAGGAGAAGGAGGCCCATTTGGCATTGGCGACAATGCAGGAAGCGAAATGTGATTTTTATTTATTTTTTTTTTTTTTAAAATGGGAGCTGTCCATATCTGAACACTAAGATGGAGGAATAGAGGGAAACAAGGGCCAAAAATATTTGTAAAAAGACCATTTATGATGCAACCAAAGTAAATTTTCCCTTATTTCCTCTATTAGAACACTGTCTGATATACACGCTTCTATTTTTAGAGGCATTAGCTATCTGAGAGATAGGATGGGTGTGACTGGGGAATATATTACAGTGATTATCTGTATCTCAACATCTCCTGCTGCTCTGTAGTGTAGGCAACCATGAATTTGTGAAGCGATCCCTGTGCTAGTTCTGTGAGGACTCGATTGGATCAAATTTGGCATCTTTTTTCGTTCTTGAAATGATATCAAGAGAGATGTCGTAGCACTATGTTGATGTTTTCAGAAACCAACAGATTTAAAACGTATGCAAGAAGGTTGTAAATCGCCTGGTTTTAGATGATTAAGATCAGACCAGCCTGGGTTTAGTTTGTCATGCATCTTATGTAGCAGTCTCCCGTTTCATTGCCTCCATGCTCATTTGCAGCACTAGCAGCAGAAATATTTGTGAATAATATCGTCCAATGTGTTTCTGAACTTGATTATCAATGGGGAAAAAACATGTTTTCTTGTGCAAAGTGCTAATCTTGAAGTCTGCTTTCCACCACAAAGCAATAATTATGGTTCAAGTGCTTATAATTCAAAGTGTGTACAGTGGCAATAATTAAAACAAAAATGGCTATTATAAATTCATGCTACTGCTTTGTGGACATGCGTATATTTATGTGGATATACATCAGTGCTGCTGTAAAAACAAGCCAATATATTGTGACTCTGTTGAGCCTTTGTTAAAGTAATTAGATGAAAATATGACCATTGGAGTGCAACATTTTTTTTTTCTCCTTTTCCACCAAATAGGATTATTAGTGATTTGTTCACGAGCATAAAAGAGGTTAATGCATGAGGAGCAGATGGACTGGAAGGAGATTCAGATGGGACATTTTAATATATGGATCAGCTGACCTGATAAGGGCTTTGATGTTTGTGAATCTGCAAGGCCAAATTGGAAATGGAAACAGACTTTTGGAAAAAAAGAAAAAAAGAAAAAAAAATCGAACAGGCTGGTCCTGTTTAATGAAAGATATTTTTCCATTTTTTAACTATTGTTCAAATAGTTGTTTTTGCTTTATTTCTGTACACTTGAAATCAATATTTTTCTCATTTTGTTCAATCATCGGTGGTGGAAGATAAGATGCGAGCAGCCACTGTGGCCGTTTACAAGCTCTGCCACTGTGATCACACACCAAATTCCTTTTTGCATTGTCTTGTGACTGTGTAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K07531 RND1; Rho family GTPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21129 lncRNA upstream 4392 10087959 ~ 10088510 (+) True G18816
TU21134 lncRNA upstream 27218 10034276 ~ 10065684 (+) True G18821
TU21132 lncRNA upstream 59895 10032772 ~ 10033007 (+) True G18819
TU21131 lncRNA upstream 61177 10031518 ~ 10031725 (+) True G18818
TU21130 lncRNA upstream 63211 10029454 ~ 10029691 (+) True G18817
TU21155 lncRNA downstream 13352 10119051 ~ 10119256 (+) True G18839
TU21156 lncRNA downstream 14613 10120312 ~ 10120610 (+) True G18840
TU21166 lncRNA downstream 26429 10132128 ~ 10132344 (+) True G18850
TU21167 lncRNA downstream 26851 10132550 ~ 10132753 (+) True G18851
TU21128 lncRNA downstream 53448 10159147 ~ 10164994 (+) True G18815
CI01000001_10072627_10081119.mRNA mRNA upstream 11723 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_09946111_09958162.mRNA mRNA upstream 134656 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_09932205_09934551.mRNA mRNA upstream 157730 9931155 ~ 9935172 (+) True CI01000001_09932205_09934551
CI01000001_09782626_09784851.mRNA mRNA upstream 307718 9782626 ~ 9785184 (+) True CI01000001_09782626_09784851
CI01000001_09582178_09593275.mRNA mRNA upstream 499619 9582178 ~ 9593283 (+) True CI01000001_09582178_09593275
CI01000001_10141190_10146911.mRNA mRNA downstream 35491 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10150798_10152858.mRNA mRNA downstream 44674 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10321783_10325266.mRNA mRNA downstream 215948 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10328133_10329110.mRNA mRNA downstream 222341 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10395420_10396473.mRNA mRNA downstream 289152 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
TU19459 other upstream 654839 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 852225 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 864043 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 2060419 8032124 ~ 8032483 (+) True G17234
TU19034 other upstream 2552442 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU21219 other downstream 134201 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 151413 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 165447 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 287858 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 369285 10474984 ~ 10476389 (+) True G18937

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043116 True 3054 mRNA 0.42 5 NC_007134.7 26979174 ~ 27006062 (+)
bowfin (Amia calva) AMCG00008881 True 2021 mRNA 0.52 5 CM030126.1 13866654 ~ 13881491 (-)