G18821


Basic Information

Item Value
gene id G18821
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10034276 ~ 10065684 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21134
CACAACGGGCAAACAGTCCAACAGTAACAGAATAAGCAATCCACAAGAAAACGCTCAGAAATGATCACCGGGGCAAATCAAGACTTCGCGGTGAGTGTGTGTGTGTGTGTGTGGCTTAAATAGTGTGAGCGTGATGGGGTGCAGGTGTGTGCGCAATCAGTCCCAGGAATGAGGGCCTATGGGAAACGTAGTCCGAATGGGAACAGTCAATATTCGGGTGATGGCTCCCTCCGGTGGTGCGGAGAAGGAGGCGAGGGAGCCACATTCGTGACAGAGCCCCCCCCCGCGAGCGGCTCCAGACGCGAGGAAGTGGGCGCCGGGGTCTACCACGTGGTTGAGGGGCCGGTCTCTCCGGATGCTTTCGGTGAAACTCGTCTATGAGTGATGGGTCCAGGATGTCATTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21134 True 405 lncRNA 0.57 2 10034276 10065684

Neighbor

gene id symbol gene type direction distance location
CI01000001_09946111_09958162 NA coding upstream 76030 9944120 ~ 9958246 (+)
CI01000001_09932205_09934551 NA coding upstream 99104 9931155 ~ 9935172 (+)
CI01000001_09782626_09784851 NA coding upstream 249092 9782626 ~ 9785184 (+)
CI01000001_09582178_09593275 PTPN22 coding upstream 440993 9582178 ~ 9593283 (+)
CI01000001_09533674_09538902 NA coding upstream 495197 9533674 ~ 9539079 (+)
CI01000001_10072627_10081119 CACNB3, CACNB3A, CACNB3B coding downstream 6943 10072627 ~ 10081179 (+)
CI01000001_10093069_10104108 RND1B, RND1, RND1A coding downstream 27218 10092902 ~ 10105699 (+)
CI01000001_10141190_10146911 PTGES3, PTGES3A coding downstream 75506 10141190 ~ 10148058 (+)
CI01000001_10150798_10152858 MIPA coding downstream 84689 10150373 ~ 10152938 (+)
CI01000001_10321783_10325266 NA coding downstream 255963 10321647 ~ 10325305 (+)
G18819 NA non-coding upstream 1269 10032772 ~ 10033007 (+)
G18818 NA non-coding upstream 2551 10031518 ~ 10031725 (+)
G18817 NA non-coding upstream 4585 10029454 ~ 10029691 (+)
G18807 NA non-coding upstream 7849 10026202 ~ 10026427 (+)
G18805 NA non-coding upstream 9247 10024728 ~ 10025029 (+)
G18816 NA non-coding downstream 22275 10087959 ~ 10088510 (+)
G18839 NA non-coding downstream 53367 10119051 ~ 10119256 (+)
G18840 NA non-coding downstream 54628 10120312 ~ 10120610 (+)
G18850 NA non-coding downstream 66444 10132128 ~ 10132344 (+)
G18851 NA non-coding downstream 66866 10132550 ~ 10132753 (+)
CI01000001_09435836_09436037 NA other upstream 596213 9435836 ~ 9436373 (+)
G17354 NA other upstream 793599 9234463 ~ 9240677 (+)
G17353 NA other upstream 805417 9216022 ~ 9228859 (+)
G17234 NA other upstream 2001793 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 2493690 7531541 ~ 7540586 (+)
G18896 NA other downstream 174216 10239900 ~ 10241492 (+)
G18873 NA other downstream 191428 10223879 ~ 10260714 (+)
G18872 NA other downstream 205462 10271146 ~ 10281369 (+)
CI01000001_10395420_10396473 NA other downstream 327873 10394851 ~ 10396705 (+)
G18937 NA other downstream 409300 10474984 ~ 10476389 (+)

Expression


Co-expression Network