CI01000001_09582178_09593275 (PTPN22)


Basic Information

Item Value
gene id CI01000001_09582178_09593275
gene name PTPN22
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9582178 ~ 9593283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_09582178_09593275.mRNA
CTGCCAAACAAGACTTCCGCCAGAATAAGTGATTTGAATCGCTCGCCAATGGAATGTGTACAGGAAGAGAAACTGTCTATTTGGCAGAGCATGGAAACCAAAGTTCCCATCACACTGAGAGCAGAACTACTGGTCCTCACCGCTGGACCGCTATTTTGTTGGGCTCATAAAGCTTCTCGTAAGCTCAGCTGTGGTCGGAAAGTCTCTTGGTCTGGTAACAAGGTGCTTGTGCTCAGAGACACACAAAGGAGAACGATGAAACTGAAGAGGCAGTCTACTAAGTATCGTGCAGAGAAGACATACCCCACCACAGCTGCGGACAAACAAGATAACGTGAAGAAGAACAGATACAAGGACATTGTTCCCTTTGATCACAGCAGAGTAAAGCTCTCCCTCGTCACATCCAAGCATGATACGGACTACATTAATGCTAGTTTCATTAAGGGGGTGTTGGGATCTAGGGCGTATATTGCCACACAAGGCCCGTTGCCAAACACTGTGCTTGACTTCTGGAGGATGCTGTGGGAATACAATGTGCAGGTTGTCGTGATGGCTTGCCGAGAGTTTGAAATGGGAAGGAAAAAATGTGAGCGTTATTGGCCGGAGTCAAAGGAGGATGTGTTTGTGTGTGAACCCTTTAACATACACTATGAGTCTGATGAAAATAAAGGAGAATATTTGATAAGGACGCTGAAGGTGACATGTAAACAAGTGTCCCGGACACTGAAGCAGCTGCACTATGTGAACTGGCCAGATCACGGAGTACCTGACTCCATTCCTGCCATCTTGGAGCTGCTGCAGGACATGAGGATTTACCAGGATCATGATGAGCTTCCAATCTGCATTCACTGCAGTGCAGGCTGTGGAAGAACGGGTGCATTGTGTGCTATCGACTATACCTGGAATCTACTGAAGAGACAGATGATACCAGAGGATTTCAGTATCTTTGAGCTGGTGAAGGACATGCGTACACAAAGGCCATCTGTGGTTCAGACTAAGGAACAATATGCACTAGTATACAGGACCATCAAATTGCTGTTTGAGCGATATCTAGCTGCAATGGAAGAACCTGACAGAGAGGTGCCAGCTTCCTCCTCACCTGTCACCATAAGTACTGGGAGTGATCTCTCAGATTTCAGCGACTCCGAATCAGAGACTGACTTCAGAGCGCTTCAAACTGAGCACAGGAGTAATGAAATGGAAATTCTAATGGATGAACACAATCACATTACACAGAAAGTCACTTCTTGGCCATATCCTCATTTACATCCATTCAGTCAAGAGGACATCTCCACCAAACTCAGTCCTGCAGACATGCTCAGTACAATGCAAACAGACTTTACAACCTATGGATATCAAAGAACTGAGCCATCCACCAGCCTCAACACTGATCTTACCCAAGCGTCATGTTCAAACTATCCCATCAGCCTAGTACAGGAGCTGAGGCCAAATATGAAGCATCTGGAGTGGGAAGAAAACCAAGATGTTAGTCCTGTTGGCAAAGACGACAAGCCTTATATCTCCAGCGCCCCCTGCTTCACTGTGGAAGATCCTTATTTTGGTCCTGAGTCTCCACCGGCTAGTGACAATCCCAGTGTTATGGAATCTATGGTTCATGAAGTCTGGCCGGAGAACCCTAGTTTCACAGTACCTAGTTTTACTCTTAATAACCAGGTGTTGGAACTGCCAAAACATGACTGCAATGACAAAGATATCAGTGAAATCAGTGAAACCAGTGAGCTGACACTGGTGATCCCAACCAGTGAGCTGACACTGGTGATCCCAACCAGTTCAGGCTCTGAGAGTGTCAACAAAGATTTGGTACAAAATATGACACAGGAAAAGCCACAGGCTGTTGTAATGAGAGTAGGGAAGTCTTTAGAATGGTCTGGGCAAACATCTGAAGCTCAGACAGACATAAAACGATCCTGGTCGAGGAGCAAGCAGCATCATCTATTCCACTCAGTCCTATTGCGATCACAAGTCACAGTCCTCCTCCCCTACTGTATAAATATCCTCAGGAAAGCCACATACTGGTGTTATAAGCTAGGTGACATCGTCATTAAGCAAGTAAAAACATGCCAACTTTAAACGCATTA

Function

symbol description
ptpn22 Predicted to enable non-membrane spanning protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in several diseases, including Addison's disease; Meniere's disease; autoimmune disease (multiple); chronic lymphocytic leukemia; and pulmonary tuberculosis. Orthologous to human PTPN22 (protein tyrosine phosphatase non-receptor type 22).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K18024 PTPN12_18_22; tyrosine-protein phosphatase non-receptor type 12/18/22

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_09582178_09593275.mRNA True 2099 mRNA 0.46 18 9582178 9593283

Neighbor

gene id symbol gene type direction distance location
CI01000001_09533674_09538902 NA coding upstream 43099 9533674 ~ 9539079 (+)
CI01000001_09509892_09522047 NA coding upstream 59097 9509892 ~ 9523081 (+)
CI01000001_09491225_09507444 PFKFB1 coding upstream 74167 9490227 ~ 9508011 (+)
CI01000001_09483845_09484834 NA coding upstream 96431 9483845 ~ 9485747 (+)
CI01000001_09477768_09481888 WISP2 coding upstream 100204 9477689 ~ 9481974 (+)
CI01000001_09782626_09784851 NA coding downstream 189343 9782626 ~ 9785184 (+)
CI01000001_09932205_09934551 NA coding downstream 337872 9931155 ~ 9935172 (+)
CI01000001_09946111_09958162 NA coding downstream 350837 9944120 ~ 9958246 (+)
CI01000001_10072627_10081119 CACNB3, CACNB3A, CACNB3B coding downstream 479344 10072627 ~ 10081179 (+)
CI01000001_10093069_10104108 RND1B, RND1, RND1A coding downstream 499619 10092902 ~ 10105699 (+)
G17602 NA non-coding upstream 5393 9576471 ~ 9576785 (+)
G17601 NA non-coding upstream 6277 9575631 ~ 9575901 (+)
G17594 NA non-coding upstream 13953 9567903 ~ 9568225 (+)
G17588 NA non-coding upstream 23758 9558151 ~ 9558420 (+)
G17587 NA non-coding upstream 24281 9557593 ~ 9557897 (+)
G17675 NA non-coding downstream 170628 9763911 ~ 9836841 (+)
G17673 NA non-coding downstream 192753 9786036 ~ 9825059 (+)
G17674 NA non-coding downstream 197657 9790940 ~ 9803333 (+)
G17694 NA non-coding downstream 211391 9804674 ~ 9805379 (+)
G17709 NA non-coding downstream 262192 9855475 ~ 9863074 (+)
CI01000001_09435836_09436037 NA other upstream 144115 9435836 ~ 9436373 (+)
G17354 NA other upstream 341501 9234463 ~ 9240677 (+)
G17353 NA other upstream 353319 9216022 ~ 9228859 (+)
G17234 NA other upstream 1549695 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 2041592 7531541 ~ 7540586 (+)
G18896 NA other downstream 646617 10239900 ~ 10241492 (+)
G18873 NA other downstream 663829 10223879 ~ 10260714 (+)
G18872 NA other downstream 677863 10271146 ~ 10281369 (+)
CI01000001_10395420_10396473 NA other downstream 800274 10394851 ~ 10396705 (+)
G18937 NA other downstream 881701 10474984 ~ 10476389 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021720 ptpn22 coding NC_007134.7 CM002907.2 26142613 ~ 26180539 (+)