Gene
RNA
| Item | Value |
|---|---|
| gene id | G17675 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 9763911 ~ 9836841 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU19824 | False | 1959 | lncRNA | 0.52 | 2 | 9763911 | 9824376 |
| TU19817 | True | 1499 | lncRNA | 0.50 | 10 | 9824058 | 9836841 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_09582178_09593275 | PTPN22 | coding | upstream | 170628 | 9582178 ~ 9593283 (+) |
| CI01000001_09533674_09538902 | NA | coding | upstream | 224832 | 9533674 ~ 9539079 (+) |
| CI01000001_09509892_09522047 | NA | coding | upstream | 240830 | 9509892 ~ 9523081 (+) |
| CI01000001_09491225_09507444 | PFKFB1 | coding | upstream | 255900 | 9490227 ~ 9508011 (+) |
| CI01000001_09483845_09484834 | NA | coding | upstream | 278164 | 9483845 ~ 9485747 (+) |
| CI01000001_09932205_09934551 | NA | coding | downstream | 94314 | 9931155 ~ 9935172 (+) |
| CI01000001_09946111_09958162 | NA | coding | downstream | 107279 | 9944120 ~ 9958246 (+) |
| CI01000001_10072627_10081119 | CACNB3, CACNB3A, CACNB3B | coding | downstream | 235786 | 10072627 ~ 10081179 (+) |
| CI01000001_10093069_10104108 | RND1B, RND1, RND1A | coding | downstream | 256061 | 10092902 ~ 10105699 (+) |
| CI01000001_10141190_10146911 | PTGES3, PTGES3A | coding | downstream | 304349 | 10141190 ~ 10148058 (+) |
| G17602 | NA | non-coding | upstream | 187126 | 9576471 ~ 9576785 (+) |
| G17601 | NA | non-coding | upstream | 188010 | 9575631 ~ 9575901 (+) |
| G17594 | NA | non-coding | upstream | 195686 | 9567903 ~ 9568225 (+) |
| G17588 | NA | non-coding | upstream | 205491 | 9558151 ~ 9558420 (+) |
| G17587 | NA | non-coding | upstream | 206014 | 9557593 ~ 9557897 (+) |
| G17709 | NA | non-coding | downstream | 18634 | 9855475 ~ 9863074 (+) |
| G17710 | NA | non-coding | downstream | 19021 | 9855862 ~ 9857182 (+) |
| G17713 | NA | non-coding | downstream | 48744 | 9885585 ~ 9887156 (+) |
| G17751 | NA | non-coding | downstream | 127070 | 9963911 ~ 9966669 (+) |
| G17753 | NA | non-coding | downstream | 134951 | 9971792 ~ 9973317 (+) |
| CI01000001_09435836_09436037 | NA | other | upstream | 325848 | 9435836 ~ 9436373 (+) |
| G17354 | NA | other | upstream | 523234 | 9234463 ~ 9240677 (+) |
| G17353 | NA | other | upstream | 535052 | 9216022 ~ 9228859 (+) |
| G17234 | NA | other | upstream | 1731428 | 8032124 ~ 8032483 (+) |
| CI01000001_07531945_07539781 | NA | other | upstream | 2223325 | 7531541 ~ 7540586 (+) |
| G18896 | NA | other | downstream | 403059 | 10239900 ~ 10241492 (+) |
| G18873 | NA | other | downstream | 420271 | 10223879 ~ 10260714 (+) |
| G18872 | NA | other | downstream | 434305 | 10271146 ~ 10281369 (+) |
| CI01000001_10395420_10396473 | NA | other | downstream | 556716 | 10394851 ~ 10396705 (+) |
| G18937 | NA | other | downstream | 638143 | 10474984 ~ 10476389 (+) |
