RNA id: TU21134


Basic Information

Item Value
RNA id TU21134
length 405
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G18821
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10034276 ~ 10065684 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAACGGGCAAACAGTCCAACAGTAACAGAATAAGCAATCCACAAGAAAACGCTCAGAAATGATCACCGGGGCAAATCAAGACTTCGCGGTGAGTGTGTGTGTGTGTGTGTGGCTTAAATAGTGTGAGCGTGATGGGGTGCAGGTGTGTGCGCAATCAGTCCCAGGAATGAGGGCCTATGGGAAACGTAGTCCGAATGGGAACAGTCAATATTCGGGTGATGGCTCCCTCCGGTGGTGCGGAGAAGGAGGCGAGGGAGCCACATTCGTGACAGAGCCCCCCCCCGCGAGCGGCTCCAGACGCGAGGAAGTGGGCGCCGGGGTCTACCACGTGGTTGAGGGGCCGGTCTCTCCGGATGCTTTCGGTGAAACTCGTCTATGAGTGATGGGTCCAGGATGTCATTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21132 lncRNA upstream 1269 10032772 ~ 10033007 (+) True G18819
TU21131 lncRNA upstream 2551 10031518 ~ 10031725 (+) True G18818
TU21130 lncRNA upstream 4585 10029454 ~ 10029691 (+) True G18817
TU21120 lncRNA upstream 7849 10026202 ~ 10026427 (+) True G18807
TU21118 lncRNA upstream 9247 10024728 ~ 10025029 (+) True G18805
TU21129 lncRNA downstream 22275 10087959 ~ 10088510 (+) True G18816
TU21155 lncRNA downstream 53367 10119051 ~ 10119256 (+) True G18839
TU21156 lncRNA downstream 54628 10120312 ~ 10120610 (+) True G18840
TU21166 lncRNA downstream 66444 10132128 ~ 10132344 (+) True G18850
TU21167 lncRNA downstream 66866 10132550 ~ 10132753 (+) True G18851
CI01000001_09946111_09958162.mRNA mRNA upstream 76030 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_09932205_09934551.mRNA mRNA upstream 99104 9931155 ~ 9935172 (+) True CI01000001_09932205_09934551
CI01000001_09782626_09784851.mRNA mRNA upstream 249092 9782626 ~ 9785184 (+) True CI01000001_09782626_09784851
CI01000001_09582178_09593275.mRNA mRNA upstream 440993 9582178 ~ 9593283 (+) True CI01000001_09582178_09593275
CI01000001_09533674_09538902.mRNA mRNA upstream 495197 9533674 ~ 9539079 (+) True CI01000001_09533674_09538902
CI01000001_10072627_10081119.mRNA mRNA downstream 6943 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_10093069_10104108.mRNA mRNA downstream 27218 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10141190_10146911.mRNA mRNA downstream 75506 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10150798_10152858.mRNA mRNA downstream 84689 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10321783_10325266.mRNA mRNA downstream 255963 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
TU19459 other upstream 596213 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 793599 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 805417 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 2001793 8032124 ~ 8032483 (+) True G17234
TU19034 other upstream 2493816 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU21219 other downstream 174216 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 191428 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 205462 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 327873 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 409300 10474984 ~ 10476389 (+) True G18937

Expression Profile