RNA id: AMCG00009595


Basic Information

Item Value
RNA id AMCG00009595
length 5285
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00009595
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42446957 ~ 42463730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCAAGTGAAGAGCCACCAAAGACTAGGGAAGAGATCCTGCTACATTGTCTGCAGGACCTCAGTGATGATCAGTTTAAGGAATTCCTCTTTATGCTGCACAGTCAGAAAAAGGACATCTCTTGGGAACAGCTGAAGAAGACAGACCGAATGGACATAGTACATCACCTAGAGAAAAGTTTGGGCAATGGAGCCAAAGAGGTGGTTTGTGAGGCCCTGCGCCagtaCCTGTCGgcagcacagaaaaacaaacttaATCACCAACTTGCGTATAAGGAAGCGGTGAAAAGATATTACCAGGAAGTGAAAGACTATGATTTCGGAGAGGTGGCCCTGTGTTCCCGCTACACGCCACTCAGGATCCAGCGGATACAGGAGAAGGTCACTGCGGAAGGCCAGAGGAGGGGGCCTCTTATAAGGCAACAGACAGTGGACAAAGAGTGCAACAACCTGGAGCTTCTCTTGACCTTGGCAAATACTAAAACCCTGGCGCTGCTCGGGCAGGCGGGCATTGGGAAGAGCTACACTGTCAAAAAGATAATGCTGGACTGGGCCACTGAGGGCCTTCTGCACAATTTCGATTACATTTTCCATCTTGATTGCCAGGAGCTCTGTGACACAAAGCACGAAAAGACCCTGGCTATGCTAATCTGTGACAAATACCCTGACTTAAATAATTTTGTGGATGAAATgttCTCTTCATCATGGATGGCTTGGACTTTGTGCAGCTTTCCACAGACCAATATGGACCAATACTCTAAGTACTTGGTGCCCTTGCTTCTACGGGGACTTCTGAAGAGGAAGCTGCTTAGGGATTGTTCATTGATGGTGACCATCCGCCCGGCTTTAGCAGACCAGCTCAAGCAGTGCGCCCAGGTGGACCAGTGGGCCGAAATCCTGGGCTTTTCTGAAGAGAACTTGGACAAATATTTCCACAACTACTTCCCAGACACAGAGTGTGCCTCCGAGGCTTATGAGCAAGTGAAGGCCAACGAGAGCCTCCTGACTTTGTGTCTGGTGCCACTAACGTGCTGGGTGGTTTGCACACTTCTCCTGCAACAGATTAATGAAGAAGGGGAAGGCCACATAGATGCTGCCTCTTGCTCCAGCACCTATGTCTTTGTGAGCTATGTCTATGCCATGCTGATGCACCACCAGACCTCCAGTAAGACCCAGAACCCAGAAATTCTTAGCAGCATCTGCCAGCTGTCTAAGGAAGGCATGGAACAATCAAAGTGGGAATTCCCACATAGGGACATTGTGAATATGTTTGGTAACATCCCCACCAACTTCCTTCAGACAAGGCGCTTCAAACATGGGTTGATGATGGTCAAGGTGCACTCATTCACCCATCGCACTCTTCAGGAAGTGCTGGCAGCTGTCTTCTATGCCACCATGAGCAACAGCAAGCACCTTGAAGAGTTCTTGTCCAAATCACTCCTCCCTGACCAGGTCCACAAGAGTGACTTCATCAAGTATCTCTATGGACTGTGCCACGAAGACTCTTGGGTGATCCTTGAAATGTTCAACTTTCAGCCCTGTGCTGATTTGGACAGCCAGCTGAGAGACTGGATGACAAAGGCTGTGAAGTATTATAACCACAATTCCAGAGACCGCTACTTCCTGCTGAACCTGCTACACTGCCTGTTTGAGTTCCAGCAGGATGAGTTCACCAGGGAGACCTTGGAAGCTCTCCGGGATGTCCATCTGCATTCAATTCTGCTGAAGGGGCATGATTTCATGGTCCTACGCTACTGTCTCCAGCACTGCGACCGCCTGCCTAATCTGGTGCTGAACCACTGCAACCTCAGGAGCAAGGAGGCTGCGAAACTTCTCCCCCTATTGGACAACTGTGAAGGATTCAGTATCCAGATGTCCAAACTCAGCCAGGAGTCTATGAAAGAGCTGAGCAGGAAGATCGGGGAGAAGAACAGGGTGATAAACGTGTGGCTATCATGGGTCGTGTGGTCTGGAAACCCCTCAGTGATGGACAGTGCCTTTTTTTCCAGGGTGAGGATTGAGGCTGTTCCCGAAGCCCACCATTAtctcaaacattttctgaaggAATGTGGCTTCTCCCCCAAAGAACTGTACTTCCATAaccaggaagaggaggatgtgGAGGGGATGTTCGAGGTTCTGAAGGAGACCGACTGCCAGCTGCAGCTTATCAGGTACCATTGCAAGCCCCTTATGATGTCACTCAGGCTCGCCCAATCAGCCAGCTGTGCTGAATGCCCGCAGAGTGTGCGCTCCCTAGTGGCCATGCTGGAGAGCAGACCCCACATCACAGAGCTGGACCTGGAGGGGAGTTACCTGGGGGGGGAGGCACTCACAGAGTTCTGTGAAGGACTAGGAGCCATCAGGGGCAGCGGCCTGCAGTCATTGGGGTTGCTGGATACCAATCTGACAGGTGACAGCATTCCCTTGCTCTGTTTCCTCCTCAAAAACACCTCCATCTCGTCTCTGAGTCTGGGACGCAATCCTCTGGGGGACACGGGGATGAGAATCCTGTGCGAGACTCTCAGAGATCCTTGTTGTGGACTGAAGAACCTCTGTTTGACTGATTGTGGGCTCACAGACACTTCTCTTGCTCACCTCAATTGGGCGCTGGAAGGGAACCGCAAACTGACAAAGCTCAAGTTGATCAGAAACAACCTGTCCAAAAGCTCAGCGGAGGAGCTCAAGAGCCTGTGGGAGAGCAGTCAGAGCCTGGAATACCTCACcttcTACCGCAATCCCGTGGCAAAATGTTTCAATTCATCTAATTTTACGCGGGAGACACTCAAACAAGAATCACTAAATGATCGGCCGGCAATATTGCGTGTTTCCGGCTGGTCTGAAAGACGTGCGACGAGTAACTCTGTAGTTGCCCTGGATGCAGAGCTGATGGACGAGCTTCGACTGAAATTCAACCAGCTGGCAGTGGGGATATCCGAGCAAGTGGATGAGAGTGAATTCAAATTGCTCAAAACGTACTGGTCAGGTTTAGTGCCAAAGCACAGGCTGGAAGCGGCGGCGGACCCTGGCCAGCTGTTGGCGACGCTGCTGGAAACTGACTGCATTTCACTGAGCAACGTGCACCAGCTGATTTCCTGCTTCGAGGAGCTGTCTTTGCCGGGACTATCGCAGCGGTGCTTGCAATACGAGAAAGAGGCCAGAATCGTTTGTAGTGGAACCTCTCTCAGTGACAGCCCCATGCACCTGCCCGGTGTCCGCCCCCCCCCGGCACCTTTCAGCGCGACGGTGCCCGTTCCGGAAACGGGGGGTCCCGGGGGCGCCGCGAGCCTGGGGGCGGCGCGCAGAGGGCCACAGAACGAGCCGCAGGAGAGCGATGAGACGCTGCTCTGTGGCCCCTGGGGGCCACTCGCCAGCACACCCTGCAGAGCGCCGATCGAAAGCGTGAACCGGCCGGAAGAGCTGGACGAGGGGACACTTTTTAACGTCGTCTCGTCGGTTAGCAGTCCTGCGAGGACCAGAGAAGGCATCTGTTTGTGGAATGCACAAGTGCTACAGGAGTTTGACCTTCTGCCATCTTTCACGGCCCAGGAGGCGTGGGCTCTGCACAGGGTCCTGGGGGATACTGTGGCTTTCCCACTGCCAGAGACCAAAGGGGAGCGCGTGAAGGAGGTTTTGTCAGCAGTTAGAGAACGGGCCGTTCTACGTCATCTCTGCGAGGCCATGAAGACCCTGAATCGCCAGGATGTGCTTTCTGCCATGCACGCTCAGAGTAACCTGATGTCCAACCTGGGCAGCGACTGGAGGATCCTTGCCGAGAGACTAGGAATCACAGCCACTTACCGAGAACTCTGGAAACAGAAGTCCAAGAACCCAGCAGAAGACGTACTCAACTCCTGGAAGAATAAAATCAGCGAGGCCACAGTGGGTAATCTGTTTGATCACATGATCTCCATGGGCCGGGAAGACCTGGCCGACATGCTGTGAGCGCCGGGACGCAAGATTTCGGAGGGTCATCTTCCACCCTGGCAGAAGGAATCTGTGTCTCCCGTCTCTCCTCGATAACCTGTGCTCTAGCGGGCAGCAATGGCCCCAGATTGCATTGACCGTGCCAGCGCCTTCAGTTGAAAAAGGAAACAGACTCTTGTTTCTGTACTCAGGGTATTTTTTATAGACCTAATAACTGTTTCTCTTGTTACCAAaagaacaagagaaaaacaGGGGAAGGGGTGGTATTTGGGAAATTGTGAAAAGAAAGTATATGTGTAACTTTCAGTCAGTGGCTCAGGTTTATTgcatacacagctctggaatatTTTGCCACTATTGATCAGATAAGCTCTCTGAAAACACAGAGTCCTGGTGATATGTTGATACGTTCACACCAAGTAACTATGCAAACTAAAATTGGCTttaaaacactatatatatatttatttattgattttgtttgtttttatcaaatatGTAGTTAATTGTCCATACAGCACCTTTTTGGCACCTTTTCTAGAGAATTCAAATTTCATCAATGTTGTGattcattactttaaaaaataaagcattggaTTTATATGgacaatatacagtactgtgcaaacgttttaggcaggtgtgaaaaaatgatgtaaagtaagaatgctttcaaggATCAAGAATCGGCAAGGATCTTCGAGTCGCTGTCTGACAGAAGCACAACCCAGAGCAAACTTCAGAAACATGCGTGCTAGAAAGCTATTAAGCTAGAAAGTCGTCCCCCCCCACACATCATGTGAATGGCCTTGGCTGAAGGAGTCTACTGATTGACATAAGAAGAATTGTAATACCGTCTTCCTTctccaaatatggatttgatgtagatttttcttctgttcactcactttgcatttagttaattgataaatataatctattaacatgtctaattttgaaagcattcgTACTTTACTGAATTTTTTCACagctgcctaaaacttttgcacagtactgtaaagtTTGAATGAATGCAAGTGCTGCTTCCTGAAACTAAACATAAGTCAAAACTGCAGAAGACCTAAAAATCCCAttgtcactttattttattttatttgtaaatacaatatgGTAGCCTACTTTTCTACAAACAAGGTGCTAACATGCTCAGATGCGCACAGACAAGAACATTTGTCTCttgtataatataatagtaGCAATAATTATTAACTATTCACTCTGTGAAGGGTGCTACACTAAATAgaaattgattgattattaaATCTGATTTGGAGCCAGCAAGTGATTGTGAATTCATTTAATCCAAGTGTAAATAAAGAATCggtattacattacaaa

Function

GO: NA

KEGG:

id description
ko04380 Osteoclast differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72470 lncRNA upstream 11805 42432920 ~ 42435152 (+) False G57964
TU72466 lncRNA upstream 11833 42432877 ~ 42435124 (+) True G57964
TU72449 lncRNA upstream 18909 42427842 ~ 42428048 (+) True G57948
TU72448 lncRNA upstream 26134 42418590 ~ 42420823 (+) True G57947
TU72447 lncRNA upstream 28452 42418141 ~ 42418505 (+) True G57946
TU72493 lncRNA downstream 4578 42468308 ~ 42468602 (+) True G57981
TU72499 lncRNA downstream 13985 42477715 ~ 42478112 (+) True G57987
TU72524 lncRNA downstream 165809 42629539 ~ 42636453 (+) True G58008
TU72671 lncRNA downstream 474277 42938007 ~ 42938874 (+) True G58123
TU72700 lncRNA downstream 542871 43006601 ~ 43010002 (+) False G58148
AMCG00009600 mRNA upstream 31412 42414205 ~ 42415545 (+) True AMCG00009600
AMCG00009594 mRNA upstream 47626 42385499 ~ 42399331 (+) True AMCG00009594
AMCG00009591 mRNA upstream 148867 42290154 ~ 42298090 (+) True AMCG00009591
AMCG00009593 mRNA upstream 166528 42275999 ~ 42280429 (+) True AMCG00009593
AMCG00009586 mRNA upstream 175760 42266822 ~ 42271197 (+) True AMCG00009586
AMCG00009604 mRNA downstream 24707 42488437 ~ 42489969 (+) True AMCG00009604
AMCG00009606 mRNA downstream 67987 42531717 ~ 42546719 (+) True AMCG00009606
AMCG00009605 mRNA downstream 102890 42566620 ~ 42570939 (+) True AMCG00009605
AMCG00009608 mRNA downstream 132363 42596093 ~ 42599734 (+) True AMCG00009608
AMCG00009610 mRNA downstream 144767 42608497 ~ 42628717 (+) True AMCG00009610
TU72303 other upstream 368716 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1452298 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2342009 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2497757 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3009962 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1469222 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1922767 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2103635 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2120832 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 2169020 44632750 ~ 44651967 (+) True G58600

Expression Profile