RNA id: TU72035


Basic Information

Item Value
RNA id TU72035
length 3858
RNA type TUCP
GC content 0.48
exon number 1
gene id G57604
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40990802 ~ 40994659 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tattgtttttggtaCAAAACAGTGAACATTTACATTCCaagtacagaaaaaacacaataggCTGTTTATCATATTTATTCTCCTGTATCCATTTATCCAccattttttacttttgaaattaaataatttaggcTTTACCCAAATTAATAAAGCTACCGTATGTTAGCACCTTTTTAATTGCAGCACGTCCTAAGCGATGGTCGTGTTCTTCAAGTATGTGttcattatcaatattattcctattattgtagatgataataatgataataataaaatattgctaCTTATTTTTGCCAAATATAAGTTTTTTCTTGTCTTCGCTAATTTAATCTGTTCCAATAAACTGAAATTAGCATATATGCACATTGTTACATCACTGAAAACACAATGATGTGAcccataaataaaaaaagtatgatGAATAATTTGTAGACAGCAGTGCTATGTGGTATTATTGATAAGGCCCGGAGAAATACGATGAATTTTTCTGAAAATCATGTCAATGTCGCGGGTATGCACGgaactaatacattttgtgtactTTATTGGTGTGATTTTGGCAGTAATCTCTCAAGCACTTGATTGTATGGTTTGGACATGTACTACACATTGTCAGAAGTAAatagtttacaaacgagagtaggccattcaacccatcaaaGTCAACTTCAGACTTATTCCGACACTACACAACAGCTTGTGCAACTGTATTGTAAGTCTGTAGGTAAACTGTATCAGATTCAGTCAGATTCGCAGTTTAGtccttgcaaaacaaacaacatgtgTAACACATCCTGATCCTAGGCATGGTTGATTTGTCAGTgactacagacacacagtcaggCTGCATCAGCAATTCCTTCATCTCCTGCAGGTGACGCCAAAATGTAGGGAGTTTTGTACTTCTCGTGTTTCGGTGGACTTTTGAAACAAGAaagttattgttgtttgtttctttgccagAGCTGCAGTTGCTGTACTGGATTCAGTTTTGGTTTTCTATGTCGGTAAAAACTGGAATCAAGATGCCGCTCAACAGTTTTCTGTAGTGATCTACAGTAACATTACAGGGCGTACAGAAGAACTGACCTCGGTGGCTCTGCAAGACTCCTGGTGGATATCGCTTTACATGATCGACTGCAGACATGTTTCGCTGTTTTTGAGACATCCACTTCTTGATCGTGTTAGTGTACAATTCAAAAGTCACATGACAAGAATCACAGCGTTTGGCTAATTTCAAGATTTCCGTACACTCCGCGAAAGAGCAATTTTCTCAGGGCCTTAATTATTGTACACATTTAGcttgcaaatacattttggtttaaactcaaattaagaattacaaaaaacatcaaagcGTCGCCAGTAACTAAAATGGCACTAACCAACAATGCTACTATATTCCCAGAATACAAAACTACTGACCTTTAGTCGACCCTTCATAAAACTGCATTTCTACATTACAATCATTCACTATAAGAGCCTCCACCATAGAGTACATGGTCCTCAAATGTAAACATCTTCTAGCGATGAATGGTGTTAAATAGCAGTAGTTCATGTGTGTACACAGAAATAGCCCTAATAAATGGTAGATGTTAAAGCTCAGCTCATACAGCTGGCTCTGtttaaaacactgtttataGAGTTATCCGTCACTGCTGTACTCCTCAGGAGTTAAGCAGGCCTTTTTATTTGGAGAACTAGGCTCTTCACCCAGGAACGCACACATGGATGATCTTTTGACAGCAGGCTCAGAGATGAAGCCCATCTGCTCAAAACAGTACAGGCTGACAGCAGCCTGGGGATCATAGACATCCGGTTCAGGGCCCTCCACCGAGATCCTGGTCAGATACTCCAGGGTGCTGATGGACATCTTGCCCCTGCTCTCGGCCTTCAGGCGGGCTACAGCGGAGAAGCCCCACTCCAGCACCACGCTGGACACGGGAAAGCAGTGGAGGATGTGGATGACATGGTAGAAGTTGGGAAAGCGTGCCCGCTCTCTGGTCAAAATATTCTGCCACATCTGTTGACTGGAGAGCTCAGCCAGGCACGAGGAGCGGAGCTGCTTGAACTGCTCCCACTCCTCCAGCAATTTGGTGATGTCCACCTGGTTGAGTGACAGGAGCTTGGCAAAGTGGCGGCAGAATATCTGAAGCTCTGCGTTGCCGAAGTTCTCCATGTCTTCCTTGGTTTCAGGCCACAGGTCAGCCTCCAAGATCTTCAGGCAGCGGATGGGCTCCATTTGATGTAGGGCCCCGAAGCGTTGGAGGATACAGCCGGACACTGCAGCCACGTACGTTGGAAGCTTATCCTTGAACGCCTGGGCTGCCTCTGCTTCACACTGCAATCGGGTGCCGCTGAAGTAAACTGACTGGGGGTCCTTCGCCATGTCGTCCAACAGCTCGTGGAGGGAGCCGTGGAGAATGCCCATGCTGAAGCGTGCCAGGGTGCTGTAGAACTTCTCCAGCAGAGAGGCGGTGTACACTAGGTCCACGTTGCTATTTTGCAACGAACGGGACAGCTTGGCGATGGGCTCCAGCATCTCAGAGAAGAGGAGCAAGTGAAGGACAAAGTTGAGGCTCCGCAGGGTCCTCAGGTACTCCTGGAAGATGGTCTTCTCTTTGGGCAGGGCTGTTTGGGCAGACATGTTGGTCAGGTTACAGACAACTGCTGGGTATGCCTGCAGCAGAGCCCTGGTGGCGCGCTGCTTGTGTTGCACCCAGCGGGTTCCTTCAGCCTGATGGGGCTTGGTCTCGGCTTCCAGCATTACCTGCGCCAGGGTCTTCAGCTCGTGCATGCGACTGGGGCAGGTCCAGTACAGCTTGCCCAGGAGGAGGAGCATTTCATTGACGTTGTCGAAACTGGTGCCGTGGAACATCTCCTTGAGGGCCATCTCCAGGCGATGACTCACGCAGCTGAGGGAGATGAGATAAGGCATATCCTTCTGCAGGAGAGCAGTAATGTCCGCCTTCACAGTGCTGCCATCTGCCATGTAGCCCACCAGCTTCCGCTCGATGTCAACGCCCTCCTCTAAGAAGGCGTTGAGCACAGTCCGCTTCAGGCACTCTGGATGCACGTGCTCCACCTCCCGGAAACCGAAGAACCGCATGCAGGGCAGACCGGTGCGGTCCACGTACAGCACATAGACCATGCCTTTCTCGGTCATCCCTGGATCAGCTGAGCCATCGACCACAACCGAGAAGTACGGGGCCTCCTGGATGGCGTGCACGAGTTCCGTCCTGGTGGACCGGCCGATGTAGTCGATGTACTCCTTGCACTTCTGCTCGGTGATGGCCGTCTGGCCCAAGTCCACCCCGTGGCGCAACTCCAGCTTAGCCAGCTGCTTGAACTTCGCCAGCGGCAGCTCCAGCTTGGCCACCGTGTAGGCGAGATCGAAGAGCCGAGTGAGATGGCTCTCTTCGATGGACTGAGCGAGTGCCGAGGGCAGGTTGGGGATATTGCCACTCAGCTTCTCCAGGGCCAAGGCCTTTTGGTGCATCTCGCTCTGAAAGTGCTTCTTCACGTTGTCCTTTTTTAAAGAGTTGCCCTCGATGCCGTTAACAAAGGCCGGGCTGAAGTTGCGCAGGTCTTTGATCTTGGCTTTGTGCTTGTTGCACAGGGCACACTGAATCTTGACCACATTGCAGCCATCGATGCCGACTTCGTACTGCAACCAGTCCTGAGCAGAATGCAGCTCCAGCTGCCACCTCTTCACCGTCTCCAATCGTAATGTCATGTTGGATGTCAGTCCCCTGTTTGTTTTTGGAGCTCAAATCAGGATCCCACTCTCCTTACGACCAAACAGGACTTCTGGGGTGTTCATGGTGCTGCTTCGGATCCAGCTTTCCAACACCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72030 lncRNA upstream 57592 40932967 ~ 40933210 (+) True G57599
TU72028 lncRNA upstream 161125 40829072 ~ 40829677 (+) True G57597
TU71954 lncRNA upstream 647421 40339382 ~ 40343381 (+) True G57544
TU71932 lncRNA upstream 831176 40159409 ~ 40159626 (+) True G57523
TU71839 lncRNA upstream 957469 40030546 ~ 40033333 (+) True G57457
TU72136 lncRNA downstream 505305 41499964 ~ 41500218 (+) True G57690
TU72199 lncRNA downstream 601570 41596229 ~ 41599122 (+) True AMCG00009563
TU72228 lncRNA downstream 754896 41749555 ~ 41750144 (+) True G57770
TU72233 lncRNA downstream 821262 41815921 ~ 41817795 (+) True G57775
TU72251 lncRNA downstream 844506 41839165 ~ 41839466 (+) True G57792
AMCG00009536 mRNA upstream 279311 40705526 ~ 40711491 (+) True AMCG00009536
AMCG00009535 mRNA upstream 296422 40677853 ~ 40694380 (+) True AMCG00009535
AMCG00009534 mRNA upstream 337984 40644394 ~ 40652818 (+) True AMCG00009534
AMCG00009533 mRNA upstream 382689 40607136 ~ 40608113 (+) True AMCG00009533
AMCG00009526 mRNA upstream 527903 40448819 ~ 40462899 (+) True AMCG00009526
AMCG00009539 mRNA downstream 59919 41054578 ~ 41067629 (+) True AMCG00009539
AMCG00009543 mRNA downstream 96390 41091049 ~ 41091910 (+) True AMCG00009543
AMCG00009541 mRNA downstream 112054 41106713 ~ 41116745 (+) True AMCG00009541
AMCG00009544 mRNA downstream 122162 41116821 ~ 41117376 (+) True AMCG00009544
AMCG00009542 mRNA downstream 129063 41123722 ~ 41132114 (+) True AMCG00009542
TU71881 other upstream 885854 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1041602 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 1553807 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 2533210 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 3374519 37610343 ~ 37616283 (+) False AMCG00009428
TU72303 other downstream 1041359 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2938293 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 3391838 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 3572706 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 3589903 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile