RNA id: AMCG00009535


Basic Information

Item Value
RNA id AMCG00009535
length 924
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00009535
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40677853 ~ 40694380 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCACACAGAGTTTAACTCGTCCATGGTGAAGAGCCAGACCAACACCGCTCGCATCGATGGCCTGAGGCCCGGGACCGTGTATGTGGTTCAGGTCCGTGCCAGGACGGTTGCCGGCTTTGGAAAATACAGCGGGAAAATGTGCTTCCAGACTCTGACAGATGACGACTACAAGTCAGAGCTGAGGGAGCAGCTGCCTTTGATCGCCGGCTCCGCGGCAGCTGGGGTCGTGTTCATCGTCTCTCTGGTGGCCATTTCTATCGTGTGCAGCAGGAAGAGAGCCTACACCAAGGAGGCAGTATACAGCGACAAACTCCAGCACTACAGCACTGGCCGAGGCTCTCCAGGGATGAAGATTTACATTGACCCCTTCACCTATGAGGACCCCAACGAGGCTGTCCGTGAGTTTGCCAAGGAAATCGATGTGTCCTGTGTGAAGATCGAGGAAGTAATCGGCGCAGGCGAGTTTGGAGAGGTTTATAAGGGCCGTCTGAAGCTGCCAGGGAAGAGGGAGATCTACGTGGCCATCAAGACGCTGAAAGCGGGCTACTCCGAGAAGCAGAGGCGGGATTTCCTGAGTGAAGCGAGCATCATGGGACAGTTCGACCACCCCAACATCATCCGTCTGGAGGGCGTGGTCACCAAGAGCCGGCCCGTCATGATCATCACAGAGTTCATGGAGAACGGGGCCCTGGACTCCTTCCTCAGGCAAAACGACGGGCAATTCACCGTGATCCAACTGGTGGGGATGATGCGTGGCATTGCGGCCGGGATGAAGTACCTGGCGGAGATGAACTATGTCCACAGGGACCTGGCCGCCCGCAACATCCTGGTCAACAGCAACCTGGTGTGCAAGGTGTCCGACTTCGGCCTTTCACGCTACCTGCAGGACGACACCTCCGACCCCACATACACCAGCTCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71954 lncRNA upstream 334472 40339382 ~ 40343381 (+) True G57544
TU71932 lncRNA upstream 518227 40159409 ~ 40159626 (+) True G57523
TU71839 lncRNA upstream 644520 40030546 ~ 40033333 (+) True G57457
TU71800 lncRNA upstream 734817 39941222 ~ 39943036 (+) True G57428
TU71769 lncRNA upstream 802683 39874881 ~ 39875170 (+) True G57401
TU72028 lncRNA downstream 134692 40829072 ~ 40829677 (+) True G57597
TU72030 lncRNA downstream 238587 40932967 ~ 40933210 (+) True G57599
TU72136 lncRNA downstream 805584 41499964 ~ 41500218 (+) True G57690
TU72199 lncRNA downstream 901849 41596229 ~ 41599122 (+) True AMCG00009563
TU72228 lncRNA downstream 1055175 41749555 ~ 41750144 (+) True G57770
AMCG00009534 mRNA upstream 25035 40644394 ~ 40652818 (+) True AMCG00009534
AMCG00009533 mRNA upstream 69740 40607136 ~ 40608113 (+) True AMCG00009533
AMCG00009526 mRNA upstream 214954 40448819 ~ 40462899 (+) True AMCG00009526
AMCG00009529 mRNA upstream 236256 40436327 ~ 40441597 (+) True AMCG00009529
AMCG00009530 mRNA upstream 256981 40412213 ~ 40420872 (+) True AMCG00009530
AMCG00009536 mRNA downstream 11146 40705526 ~ 40711491 (+) True AMCG00009536
AMCG00009539 mRNA downstream 360198 41054578 ~ 41067629 (+) True AMCG00009539
AMCG00009543 mRNA downstream 396669 41091049 ~ 41091910 (+) True AMCG00009543
AMCG00009541 mRNA downstream 412333 41106713 ~ 41116745 (+) True AMCG00009541
AMCG00009544 mRNA downstream 422441 41116821 ~ 41117376 (+) True AMCG00009544
TU71881 other upstream 572905 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 728653 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 1240858 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 2220261 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 3061570 37610343 ~ 37616283 (+) False AMCG00009428
TU72035 other downstream 296422 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 1341638 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 3238572 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 3692117 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 3872985 44567365 ~ 44570531 (+) True AMCG00009694

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031508 True 1973 mRNA 0.53 12 NC_007113.7 46589820 ~ 46728000 (+)