RNA id: TU72199


Basic Information

Item Value
RNA id TU72199
length 2166
lncRNA type sense_over
GC content 0.40
exon number 2
gene id AMCG00009563
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41596229 ~ 41599124 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATGACTTCACTGTTCCGCCTGGGTTTCCTTTATGATCCCGGGATCTCCCAGTTTTCTCTTCAGACCTCTCCGAGCTCCGGGAACACAccactgctctctctcactctctctctcttgcacatCTTGAGATCCAAACACGCCCGTGTATCCGTCcatgcacagcacagcacgggAAGACTACATGTCATCATTGCACTGAAAAGGGACTGCAAGAGGACGACACTGCATGCACTTTGTTTTCGGGGATCTACGTTATAAAGAGCGGTTGCATCCATCCTtcgacatttcagttttttcctgtttctacgCTGAGTGCCATTATGTCTGAGATCCTGCCATACAGCGAGGGGAAAATGAGCGGCTATGGAGCAGACAGCGACAGTCAGATTTCCTTCAGCTGTCGGCTGCAAGACACCAACACATTCTTCGGGGCATCTCAAGCAAAAAGACCCCCCAAACTTGGACAGATCGGCAGAGCAAAGCGAGTGGTGATTGAAGATGACCGAATAGACGAGGTCCTGAAGGGCATGACGGACAAGTCCTCACCAGGTGTTTAAATATGACAGAGCCCTTGCAAACTTTTCTTTTCTCACCGGTTTGAAGCACTTTTCGGCTGTGCATGTGTTTGAGGATTGTAAGCAGAGGAGAAGGGACGAAGCGATGAAAGTGGTGACATGAAGGagggggaagaggaagaggaagagaagacGGAAAGAGAGAGCCCGAGATTGATATTGGGGTTGCTGGCAATTCTCCAAACGAAAACCCGATTTCCAAACCACTGCTGGCAGGAAGATGGCAAGATGGCTGATTCGTGCAGCTCCGTCTTTCAGTCTCTGCCTCTGTATAGCGATGGATGGACTTTCCATTTCACGACCATCTTCCAAAATGCGCTGTAAACAACAATAACCACTGGAAGGTGAAACCCATTTCCAGCCCCGTTTCTGTTGCTGTACTATAGCCTGTTTAAGCTCATGTTTCATCCGCGCGTACCattgaaaacacattgaagACGCATTGAAGGGAGCTGTTCTTTCAGCACCGCCTGAACGCAGAAGGCATCCCTATTGATGCTAGAGCTTTTTCTTAGCTGACCAATCACAGacatttcaattgcattttGTGGGAAGACTTGATGTATGTAACGtttgaaaaatatacacaagGACAATAAtactttatgttttgtttttttgtttttgttgggaGCTgcgtttttttaatcaaagtaaaataatttaattatcctATAAGGAGAACCGACGTTTTTcaacgtttttgttttgtaatgaaacTGTACAGCCTTCACAGATTGGCATCCGCACTTCATCCCTTAACTAGTTCTCAATATCGGAAGAGTTTTTCTCATCTAATGCCAGCAGGGATggtaaaaaataacacaaaaaataaataaagaaataatattgaatcaatcaatcaatcaatcaatcaatcaaaatcaaTAATGAGAAAGACTGACAGACAATATTTTTTCTCCATCTCTTTGCATGAACTTCCGATCCCGGTGCCAACGCGGGTGCCACCACCATTCCCACCTATCCTGGCACggttgtttttaacaaaaaaaatcatatttgtatttttatatctaaatatttgttatttaaagttatatGCTAGTCTAACGTCTTACAATTCACCAAGAAAAAAGTACTTTGGGAAGGATATTCAGATTGAGACTAACAGAAGATCTCAGATTTGGTTTTGTCTGTCTCATTCTATATCAAGTATTGGGGGTAATAATGATTACAAGGACTTATTgaatgtgttttggtttttgcaCACATCAATGTAAAACTATTATTAAGAAATACTGTGATTTGGGCTTCGTTGATGGGTTCGTTAGAAATGACAACTTTAGAATTGATTGCACTGTTTACGAGTATCTTCAAATAACACGTTATTTGATCGAGTTTTTGGACAttaaagttgtgtttttatttgatttattttgtaccattCCTCTGAAGAGATAATTAAATATGGTTTGTTGTGCATGAAAccttaatattttcaataatgAAACATCATTTTATGAagcaaaaaagcaacaaaaatgtCATGACATTCTAAGAATGATTCATTGTATATTATGATgccattttcactgtatttggTGAATTAATAAATGGTGAAAGAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72136 lncRNA upstream 96011 41499964 ~ 41500218 (+) True G57690
TU72030 lncRNA upstream 663019 40932967 ~ 40933210 (+) True G57599
TU72028 lncRNA upstream 766552 40829072 ~ 40829677 (+) True G57597
TU71954 lncRNA upstream 1252848 40339382 ~ 40343381 (+) True G57544
TU71932 lncRNA upstream 1436603 40159409 ~ 40159626 (+) True G57523
TU72228 lncRNA downstream 150433 41749555 ~ 41750144 (+) True G57770
TU72233 lncRNA downstream 216799 41815921 ~ 41817795 (+) True G57775
TU72251 lncRNA downstream 240043 41839165 ~ 41839466 (+) True G57792
TU72317 lncRNA downstream 486157 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 803113 42402235 ~ 42402452 (+) True G57940
AMCG00009556 mRNA upstream 7475 41586666 ~ 41588754 (+) True AMCG00009556
AMCG00009562 mRNA upstream 27397 41560388 ~ 41568832 (+) True AMCG00009562
AMCG00009554 mRNA upstream 86382 41504994 ~ 41509847 (+) True AMCG00009554
AMCG00009555 mRNA upstream 97424 41485230 ~ 41498805 (+) True AMCG00009555
AMCG00009552 mRNA upstream 116233 41476537 ~ 41479996 (+) True AMCG00009552
AMCG00009564 mRNA downstream 79430 41678552 ~ 41683695 (+) True AMCG00009564
AMCG00009568 mRNA downstream 176087 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009569 mRNA downstream 233749 41832871 ~ 41844457 (+) True AMCG00009569
AMCG00009575 mRNA downstream 302711 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009577 mRNA downstream 352545 41951667 ~ 41960909 (+) True AMCG00009577
TU72035 other upstream 601570 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1491281 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1647029 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2159234 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3138637 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 436896 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2333830 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2787375 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2968243 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2985440 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile