RNA id: AMCG00009534



Basic Information


Item Value
RNA id AMCG00009534
length 555
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00009534
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40644394 ~ 40652818 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCTCATGTtatctgtctgtccctctccaCAGCCTGTCCCCCAGGAACGTTCAAGTCCAGCCAAGGCACGGGGTTGTGCTCCCAGTGTCCGACCAACAGCCGGTCCACCATGGAGGCGGCCACCATCTGCGTCTGCCGCAACGGCTACTACCGCGGAGACATGGACCTCCCCGATGTGCCCTGCACTAGTGTCCCATCAGGCCCACGCAACGTGATCTCCATCGTGAACGAGACCTCTGTGATCCTGGAGTGGCACCCTCCCCGGGAAACGGGCGGCCGCGAGGACGTCATGTACAACATAATTTGCAAGAAGTGCCGCACGGACCGCAAGACCTGCTCGCACTGCGACGAGAACGTGGAGTTCGTGCCACGCCAGCTGGGCCTCACCGAGTCCCGGGTCTTCATCAGCAACCTGTGGGCGCACACGCTGTATACCTTTGAGATCCACGCCGTCAACGGTGTCACCAACAAGAGCCCCTACCCCTCGCAGCACGTCTCCATCAACATCACCACCAACCAGGCCGGTGAGTCTCGCCAATTTCCTTTCTGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71954 lncRNA upstream 301013 40339382 ~ 40343381 (+) True G57544
TU71932 lncRNA upstream 484768 40159409 ~ 40159626 (+) True G57523
TU71839 lncRNA upstream 611061 40030546 ~ 40033333 (+) True G57457
TU71800 lncRNA upstream 701358 39941222 ~ 39943036 (+) True G57428
TU71769 lncRNA upstream 769224 39874881 ~ 39875170 (+) True G57401
TU72028 lncRNA downstream 176254 40829072 ~ 40829677 (+) True G57597
TU72030 lncRNA downstream 280149 40932967 ~ 40933210 (+) True G57599
TU72136 lncRNA downstream 847146 41499964 ~ 41500218 (+) True G57690
TU72199 lncRNA downstream 943411 41596229 ~ 41599122 (+) True AMCG00009563
TU72228 lncRNA downstream 1096737 41749555 ~ 41750144 (+) True G57770
AMCG00009533 mRNA upstream 36281 40607136 ~ 40608113 (+) True AMCG00009533
AMCG00009526 mRNA upstream 181495 40448819 ~ 40462899 (+) True AMCG00009526
AMCG00009529 mRNA upstream 202797 40436327 ~ 40441597 (+) True AMCG00009529
AMCG00009530 mRNA upstream 223522 40412213 ~ 40420872 (+) True AMCG00009530
AMCG00009524 mRNA upstream 424025 40212648 ~ 40220369 (+) True AMCG00009524
AMCG00009535 mRNA downstream 25035 40677853 ~ 40694380 (+) True AMCG00009535
AMCG00009536 mRNA downstream 52708 40705526 ~ 40711491 (+) True AMCG00009536
AMCG00009539 mRNA downstream 401760 41054578 ~ 41067629 (+) True AMCG00009539
AMCG00009543 mRNA downstream 438231 41091049 ~ 41091910 (+) True AMCG00009543
AMCG00009541 mRNA downstream 453895 41106713 ~ 41116745 (+) True AMCG00009541
TU71881 other upstream 539446 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 695194 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 1207399 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 2186802 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 3028111 37610343 ~ 37616283 (+) False AMCG00009428
TU72035 other downstream 337984 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 1383200 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 3280134 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 3733679 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 3914547 44567365 ~ 44570531 (+) True AMCG00009694

Expression Profile