RNA id: AMCG00009586


Basic Information

Item Value
RNA id AMCG00009586
length 1359
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00009586
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42266822 ~ 42271197 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGTTACAGTCAGAGATATAATGGCAAGCCTTGAAAAATATATCCCGTCCCCAAAGTCCAACGTCAATTTCAGTCAGTCGACGAGTGGAAAGAACAGTGAGGCGACTGTGATCGAGCCCAAAAAAAAGTACTGCGTGGGAGAGACTCTGAGCGTCTTGGTGCAGATGAGGGACCACCGTTTTTACCTCAAGACCTACGGAGGCGATTTCATCACAGCCCGGATCTATTCTTCCAATCTGAAGGCAGCAGTTTCGGGGGTTGTCGAAGACTTGCAGAATGGTACCTACCGAATCAATTTCAAGTTGTTCTGGCCAGGGAAAGTGACGATCCATTTGCTGCTGATCCATTCCAGCGAGGCTATCTCGGCTCTATGGAGAACAAGGCAGCAGGACTATGATAAAATTCTTTTCACGGGGGTCTTCATCAATggcacaaagagagagacatcaCCCTGCCGGTTTGTGAAGAGCCCGAATACTACCGTGTGTTCTTACGGGGATGAGCGGGATGGTGAGCGTTTTTACTGTCTCAAGACGCACTCCCTGCCTTGCGAGGCTCTGTATGAAATGGTCACGGGCTACAATCAAACCAGACTTTTCAGCACGGAGGAGAACAAGATGCTGCAAAGTGGCTACTTTTTCCAAAACAAGTGGTTCTCCTCCTACTGCCACACCGAGAACTTCCTCAGTCCAGACTCCATCACTGGCTGCCTGCGGGACAAAAGTCTGCATTTCAGGGGCGACTCCACTTCTCGCCAATGGATTGAGTATTTAGTGGCAAAAATTAAAGATCTGAAGTACACCATTCCAATGGATGGCAACGTTCCAAGGCTGGCCATCTCGAGCAATCATAACTTCAGTGTGCAGTGGAAAAAACACGCTCATCCATGGATGACTGGAACACCACAGCCTTTACATTATGCATCATACATAGCTAGAGACCTTGACAGTATAGCAGGGGGAGAGAACACTGTGATTATGATCTCTGTGGGCCAGCATCTGAGGGCCTTCCCTATACAGCTTTTCATCAATCGCATCATTAGTATCCGACGGGGAATCGAAAGACTGCTGCAGCGGAGCCCCCTGACCAAAGTCTTCATCAAAAATGAGAACACACGGAATATCTGGGAATACATCAACGTTTACAATAACTGGCATGGGCATCTAAATAACTTGGCTCAAAAGGAGGTGTTTAAAGGGCTGGAAGTGGGATTTGTGGATGCCTGGGACATGACAATAGCTTCCAATGAGTTTGCAGTCCACCCTGCAGAAATGGTTATCAGCAACCAAGTGGCCATCTTCCTCTCCTACCTCTGCCCCTCACAACCAGCATCCCCTATACCTTTCCAGTGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72317 lncRNA upstream 178677 42085279 ~ 42088145 (+) True G57843
TU72251 lncRNA upstream 427356 41839165 ~ 41839466 (+) True G57792
TU72233 lncRNA upstream 449027 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 516678 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 667700 41596229 ~ 41599122 (+) True AMCG00009563
TU72439 lncRNA downstream 131038 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 144393 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 146944 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 147393 42418590 ~ 42420823 (+) True G57947
TU72449 lncRNA downstream 156645 42427842 ~ 42428048 (+) True G57948
AMCG00009587 mRNA upstream 42303 42213604 ~ 42224519 (+) True AMCG00009587
AMCG00009588 mRNA upstream 55274 42193294 ~ 42211548 (+) True AMCG00009588
AMCG00009580 mRNA upstream 91122 42170346 ~ 42175700 (+) True AMCG00009580
AMCG00009581 mRNA upstream 188531 42075478 ~ 42078291 (+) True AMCG00009581
AMCG00009578 mRNA upstream 224611 42036018 ~ 42042211 (+) True AMCG00009578
AMCG00009593 mRNA downstream 4802 42275999 ~ 42280429 (+) True AMCG00009593
AMCG00009591 mRNA downstream 18957 42290154 ~ 42298090 (+) True AMCG00009591
AMCG00009594 mRNA downstream 114302 42385499 ~ 42399331 (+) True AMCG00009594
AMCG00009600 mRNA downstream 143008 42414205 ~ 42415545 (+) True AMCG00009600
AMCG00009595 mRNA downstream 175760 42446957 ~ 42463730 (+) True AMCG00009595
TU72303 other upstream 188581 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1272163 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2161874 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2317622 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2829827 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1661755 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2115300 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2296168 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2313365 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 2361553 44632750 ~ 44651967 (+) True G58600

Expression Profile