RNA id: AMCG00009654


Basic Information

Item Value
RNA id AMCG00009654
length 1991
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00009654
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43736597 ~ 43740863 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCGTCCTGTCCACACTGCTGTTTGATTGGACAGTTGTGCGGCGTGTGGGTAAGAGGCAGGACCCCGTGTTCTGCTGAGGGAGACTTTTGACAGAAGCGCTGGACGCATTGAAACGAGAGTCGTGCAACACAAATGTTACATGAATTAAATCTAACAACTGTTCTGTACATGTTGGGATCACTTATATTAGCTAAATACGTGCACGTTTAGCCaactattttgaaaaggaagcAAATTACATTATAATCGCATGTCTTAAGCAAAGAAAGCTGCAGTTTGAAAGAATACCACATTTCCCACAAGCTCTTGGATCATGGAGAAGGAGGCACCAGCACACCCTTACTGGCCACGGGAGCTATCCATCCCAGGCTACCGGGCTAATGACCGCTCAATGCCGGAGATTCTCGCATTTCTGTTCTCCGTGTCGGGGATTCTGCTGGCGGGCACCTGGCTGTGGACGGGCCGGAGCAGCTGTCTGGGCAGCGGGCGGAGACTGGCACTGTGCTGGTTTGCAGTGTGCGGCTTCATCCACTGGGTGATTGAGGGCTGGTTTAGCCTGTATTACCACGTCATCCCCTCTGACCAGTCCTTCCTCTCCCAGCTCTGGAAAGAATATTCAAAAGGAGACAGCAGATATGTCATAGCGGACAACTTCACAGTGTGTATGGAGACCATCACCGCCTGGGCCTGGGGTCCTCTCAGTGTGTGGACGGTCCTGGCTTTCCTCTACAACAAGCCCTACCGCTTTGTCCTCCAGCTTGTTGTCTCTCTGGGCCAGCTGTACGGGGACGTGCTGTACTTCTACACGGAGTACCGCGACGGCTTCTCTCACAGTGAGATGGGCCACCCGCTCTACTTCTGGTTCTACTTTGTCTTCATGAACGCTCTGTGGATCATCATCCCCTCTCTACTCATTCTGGATGCCTGGAGACACCTGAGCACGGCCCAGGCCCTCTCGGACAGGGCAAGGGGCCCTCGGGGGAGATCCAAGGGGGAGTAGATGGGATCAGCAGGGGACAGAGTGACTAGACCTGCCCCCCCTCTTTGGCACTAGATCCCTGAAATGCCAGTCTGAGAGGTTACCAGGATGCCCATCTTGGCTTGGGACCCTTAAAGGAACCTCCTTACATGTTCTCCTTGATTCTTGCTCTGatgacttttctgtttttctgatcAAGCTAGTTAACCATTgcagcagaaaaacaattactgtACTTGAAGAGACTTTTTAAAAGGGATTTCCTCTATggctttgtttgtatttctctgacccaatgctttttgttttataattgaaattatCTCTTGCTGTAGTCGGGCTCTGTTTGTTTCATTCCATAGCTTGATGCACAGAAACATGGCAGccactttgcattttaaaaaggcacttTTCTTGTTCTGAACAAAGCACttaatgcagttttctttttatttgacttCTCGCATGTGGTTTAACACAAGCAGCtctcaatatattattaatgttttataaaacaggCACGATTAATACCTATGAAAAGAGACCGCTGAGCGAGACAAATGGATTGCTCCATGCCTGCTGATTACAGATGTATTACCTGAAAGACTGGTAATAACAAAAGCTGTTAAAAAGGGCCACTTCCTGTTTTATAGACTGCTTGATTATGTGTTGGGTAAGATCATTGCTAATGTGGGCTCTTATGTTGTCTTTCATGTGTAACATCATGTAACCTCACACTTTGGTTGTGTTGCCGCTGGAACCGTTACTTTCTAGGTCACATTTTGAGAAGGAATTTTAGAGAATCAAAAATTGCATCCCACAACAAAGAACTACATTAAGTGCAATAACATGGTTTGAACAACACATTCCTGGTGTTAATATCCctgaatgtatgtgtatgtacttTCCAGTCACAGTTGTTTGTGTTGATTGATAAGCTATAAGATAATTTGAcagttttggaaataaaaaaatcatccactcattaaaaaatatataattttacataa

Function

GO:

id name namespace
GO:0016125 sterol metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047750 cholestenol delta-isomerase activity molecular_function

KEGG:

id description
K01824 EBP; cholestenol Delta-isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72871 lncRNA upstream 55644 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 292280 43439399 ~ 43444317 (+) False AMCG00009647
TU72773 lncRNA upstream 412018 43318916 ~ 43324579 (+) True G58214
TU72776 lncRNA upstream 425535 43309860 ~ 43311062 (+) True G58215
TU72753 lncRNA upstream 486956 43249403 ~ 43249641 (+) True G58195
TU72891 lncRNA downstream 132918 43873781 ~ 43875723 (+) True G58304
TU72908 lncRNA downstream 168725 43909588 ~ 43915760 (+) True G58317
TU72912 lncRNA downstream 180611 43921474 ~ 43926631 (+) True G58319
TU73083 lncRNA downstream 428622 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 584288 44325151 ~ 44325573 (+) True G58510
AMCG00009656 mRNA upstream 16447 43671769 ~ 43720150 (+) True AMCG00009656
AMCG00009647 mRNA upstream 292177 43436990 ~ 43444420 (+) True AMCG00009647
AMCG00009646 mRNA upstream 311747 43416831 ~ 43424850 (+) True AMCG00009646
AMCG00009640 mRNA upstream 418096 43315628 ~ 43318501 (+) True AMCG00009640
AMCG00009635 mRNA upstream 463225 43267927 ~ 43273372 (+) True AMCG00009635
AMCG00009653 mRNA downstream 2591 43743454 ~ 43748128 (+) True AMCG00009653
AMCG00009655 mRNA downstream 10620 43751483 ~ 43756359 (+) True AMCG00009655
AMCG00009658 mRNA downstream 94020 43834883 ~ 43852529 (+) True AMCG00009658
AMCG00009659 mRNA downstream 118218 43859081 ~ 43873704 (+) True AMCG00009659
AMCG00009662 mRNA downstream 139166 43880029 ~ 43890471 (+) True AMCG00009662
TU72303 other upstream 1658356 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2741938 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3631649 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3787397 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 4299602 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 192089 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 645634 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 826502 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 843699 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 891887 44632750 ~ 44651967 (+) True G58600

Expression Profile