RNA id: TU74023


Basic Information

Item Value
RNA id TU74023
length 7254
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G59202
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45908581 ~ 45964055 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttggattaattttctatacatttctaGAATGTTTATTCCACCTGGGAGTTGTGGGGTGGGATGTGTAGATAAGTGAACACACAAACTGTTAGaatgaattttaattccaggctgtTGGCTTTCTACAGGAGTTACAGTCAAGAGTACAGGTCAAGAGTCACACAAGGGGTCAGCAGAGCAGCTCCCGTGATGCAGTGCGCTGCAGCACGCTGCAGGGAGAGGCAGCTGACTGCGGACTGGACAGTGTCTGTGCTCGCCCCCCTGGACAGCCCCTGGAAGAGCCTCAGTGTGTCCATTTCTTGGATAAAGattgaagaaattaataataataaataatctcgTCAGAAGGCTGGAGCagattttaatattactttattaatcACTAATATAccgactgacagacacactgactaactgatacattgactgactgactgactgactgacagacacactgactaactgacacactgactgatttaCAGACTAACTGatacattgactgactgatggatacactgactgacagatgcACTGACTGGCAGAGGTGACAGGAGAACAGCTGCCAGAATTTGTGTTGATTAGTCAGCACAGTGTGGGAAGTAAAGTGGGAAACTGATTCAGCTGGGggtagagacagagagagagatttaaaaagcaattatagAAAACATGCTaccaaattacaaaacataacagGAGAAAGTCAAGTcagtaattaatataaataagtcACATACTGAAAGAGAGGGCACGTGGTAATACAGCACAGCCTGTCAATCGTGTCCAGGTTCTCAGGGACGCAACAGGGACAGAAGAGAAGCCATGAGAGCATGTGTGTGACACTTCCCTCctccctgctcctcctcctaCCCCTATATCCTCCACTCCTACCCTCTCCCCCCTTGCACCCCCTCTCTGGTTCTTGTACAGTACTTGTTCAAATACTATACTGCttccacagagacagagagagagagagagagagagagTCAAGTCTTTGGCTCTCCCACACAGTGTCACAAACCAGCAGATCTCGGTTATTCATTTGCTGCagaatattctctctctctctctctgcctcccttcTTCTCTCCTTTCCTCTATCTCTCTTTAGGCAGCTTTAGTGTGTGTGcactgtgcctgtgtgtgagtggatgccagtgtgtgtgtgtcagtgtgtcattgtgccttgctgtgtgtgtgtcaatgtgtcatTGTgagagtgtttttgtgtgtgtgtgcatttgtataaATAAGCAGAAAATTCTGCTCAGgaacaggtgagagagagagaaagagagaaagatggaaaaAGCAAAAGGCCTATAAAGAAACAGCTGTGctgcgctgtgctgtgtgcGTGCTGTACTGTGCAGCTTGCTGTAACCTGCGCTGTGCCTGTGTGCTAAATGTTGCACTTCCTGTCACTATGACGTGTTCCTGTGAGAAGGAGTGTGTGTGACACTGAGAGGCACGCAGGGCACCTGCGATCAAGAAAGAGCAGAAGAAGAGGATGACTGGGCAGCTCACAATGGACATGTAATTAAATACCTcccagtgagtgagtgtgtgtgtgtgcacgcgtTCCCTTTAATATCAATTGTCTGCAGTAACGTGGGAGCCCCCCCCGACCCTCCAGTGCGATGACATCAGCACCGATCTCCACATCAGAGCATTTACATCAGTAAATATGGGCGAGCAGATGACTCACTGGCACACACCATTCAGACACAAGCTGCACTGTgcctacacacagcacacaactaCCGGCCTCACTGCggccctggggggggggggggggggggggaggccCGATACATGTATCCAAGCATATCGCCCACCCCtaatgagggagggagagagagagaggaaagaagagCTCATGGTTGGAGccaagagacagacagacagatctaCAGAGATGGAAACACTGACTGCAGTAAACAGTCAGTCTGGAAATGTAcccagagagagaaaacagccaaatgcagcaaaaaatgctaataaataGACATATAGGCATATTGATAGATAGACAGGTAGGTATAGACATACAGACAGGCAGAGCACAACGAGTGCGTGGGAGTGTGGCAGGACTGAGCGCTGCCTCTCTGAGAGCCGTGTGTGTTAACACCACAGGCTTCCCTTGTGGAAATGCAGAACTTCGATTCGAGGCTGCTCTGTGTTTTACCTGCGTGTTTGTCTCGTTCATTTGCCGCTGAGTCCGTCTCCCTCCCCCTGCTCCCCCCCGGCAGTGCCCTTTCCAAGCTGAATTTAATAGGAGCAATTAGCCGGGCAAATTACCCCCCTGTCACATAGGCAGATGAAGGGAACAGACTGCCCCtccccacatacacacatgcgcacacagaCTGCAGGGCAGAAGGGTTTGTATGATCATCGCccttgttgtgtgttgtgtagaaGACTGCTCACACCCTGAGCCAATAGAGGGGGGGGGTCAGTGCAGCACAGTATGTTTGGATTGCTCTGGATCAGCAGCTCGGCAGTttacacaaccccccccccccccccccccccacagcaaTGACACACTCCTCACCGGCTCCactgatagtgtgtgtgtattaatgacCGAGGCGAGAGAGAAATACTTTAGTCTGTCTACAGGAGCAGGAGACTCGTACAGAAGAGGCAGGCTGTGCTGGCAGTGCACGGTGGAAGTGTGTGGGGATGTGAGGAAGTGAGGGGGTGTATAATTACTGAAAAGCTAATGCCTCAGTTCTTGAGCACACTCCTCGGCCACACGGGCCTCTCGTGGTGCAGACACTGTGCGTTCACTGTGTACTGtgagtataatatatataactgtataataaACTATTCACAGCAGCATTGTGAATATGAGCCACGGCTGCAGTGCTGATGCCCCACTCATGAACCCCATTGCTGCGCTCTATCTGCACTCCTCCTGTGGCCACCCACCACACTCAGTCCTGTGAAGGACGCGCTTCACACAGTCTCCCCCCGCAGGACGGACCTTGCCGCTGCAGCCCAGCATTGAACCCACAGCACCGTGATCGTCCTCGGCCAACCGCACTCGTTCAGTTCACTACAGCAGATATTATGGGATTGTGCAGTGTTATAtaaacggagagagagagatcacgTAGGGTCTAGAGGAACAGCAAATGcacatttattcatataaaaacaaatgagaagTGTCATTGAGGGTTTATTCTCCAAAGACAGGCCCAGGTCTGGTCTGACAGTTTTATGAAGTgagcacacgcacacgcacacacacactgaacatcAACAAGCAGCTCGCAACTCCGGGGTCGAACATTGCGACACGCCATTGCGCTTTCAGAGGAAGAAATGGCAGCTCTGTCCATTATTCGCCGCGTGGTCCCGACCGGGACACCTCGCCACACCTGAAGAGTGGAGTACGCCGTGCCCATCGTAACCAAATTACTGACAGACTGGTCCTACTGCAGAAGACTGCAGCAAATCAAACCTTACAGCTTTTCTGACACAGGGGCATACAAACTGGGCCTGGATTTGAGATTGGATTCATGTCTTCCCCATCAGGCTGGGCAAGTCACACAATACCCCCATGAGCATCAGCACCAGTCCACCCCACTCTCACCCAGCACTGCGGCCCCTCGGATAGGACCGacacccaccccccccagccCACTCCACAACAGTGTCCAGAACTAGCTGCTGTCCCGAAGCGGCCCAGTCACTGACGgacaaaagtaaatacaaaaaaatatatatatatacattttctaccAAGAGAGCCTTGCGTGCGCCCCTcccaacacccacacacacccatacacacacgAGTTGAAGGGCAGCTGCCCCTCCTCACTGCCACACACAGCCAgtcctggggtgggggggtatagGGGCATTTCAGTCCCTGGGGGCAGCAGTGCAGTATGAGTTCAGGTTTCTTCCCCCACAGTTCACTTGCTGTTTATTTTGGACCGTCAGTTGCCCCCCCTGCCCCCGTCGTCTCCGTGGGACGCTGTGCCGGCGCCGTGCCATGTGGCTACGCCTCCTCGGGGGGGCGCTGCGGCACACAGCCATCCATCTCTAGCGCCTCAGGCCAGCCCTCGTACTTGTTGGTCAGCTTGCTGTTCTTCATCCGCTGCGAAACACAGGAGCcgtcagacagacacagagagacagacgcacagagagacagacgcacagagagacagacgcaCAGAGTGCTGCTGTGAGGCACAGTGCGGGGGGGCTGACCTGCTCGAAGGGACTCTTACTGTCGATGCCCTTGGCCCCCACAAACACCCAGCTGTCCCTGAAGGCCAGCTCCCTGATCGCACTGCTGCCCAGCTCCTCGAACAGCCGGCGCGCCTCCTCGTTCAGCCTGGACAGCGACAGGGACATGGGCCAGGTCAACATCATGGGGACAGGTCAATAGGACTGGGTCTATGCATTCAAAATGATCAAAACCCAGGAGACACTcagagagcagcagagcagcaaAACAGCAGGGCTCAGAAACGGCAGCCCTGAGCCGCAGGACGCCGCCGCACTCACACCGCTTGGCTTCACGGCTTCATCCCGGCTGCGTCTCCGACACCGGGAACCCAGGACTCGTGTCCCCGGGTTTATAAGAGCGGAGACGGATTTGACCCAGATAACCACTGTGAGCCGCACCCCGGGGAAGGTGTTGTGCGGTGTCCAGGCCCGGATACCGGCCTTCCTGACCGAGCACAGCGTCCCGACTCAGACTGGCTTCCAACACCACACTACAGGCCATATCTACACCCCCCTGTCCACCTGACCCAAGAGggattgttttgcttgtttaaatcacttttcaaaagCATTCGATTCTATCTGGCACAAAAAACTAGTATGATgatggcagatgcccttatccagggcgaacAGATTACAAACTACTACACAGTGGAATAGGGAGTAAagtgttttatacaattaaatcaatgcattcTGAGCAGAAATGTGGTATAAAAACTGGCACTAAACCAACTGAGTTCTTCTCCGGGAGACGGGACTGCTGTCCGAGTCCAGCGCTGTTGtttacattcattaatttgatTACATGGATTCatctacttttatttgtataaattcagaggattattttatttttgctgtccataaatatatgcatgcatgtgtgtgtaaacatttcTTAATGCACTGTCAATACCTATTCTGGTGCTGCCAAGAGAGcactttcaatttgaaatggaaGGAGACACACCCAGTGAGAgacagtgagtgagtgtgtatgtgtgtgtgtgtgtgcgagagactCACTTCGTGGAGGGGTCGTCGTACGAGGCTGCAAACACCAGGGTGCCCTCGTGCAGCGGCCTGAGGAACTTCAACAGCTCCCCCacatctagagagagagagagagcacctTCAGTCTCATCTGAAATGCTCCTGGAGTTGAGGGGTTTTGCACTTAGAACCTCAgaacatttgagagagagagagagagagtgcccGTGCTTGGGTCAGTGTCCAATTATTTTGGGCTAGGGTCTAGTTAATCGGACTCCACTCACCTCCGGCCCACATGTCAAAGTGCTTTGTGTCCAACAGCTCCCCGGTCACccctgagagagaaagacagtcaCTATAAACACTAAAAAtctccattcacactgaaacaaatgctggctatttggtggcattttgtcagcaaggtctgtgtgaaatgcatttaaataccaGCAAATTTTCCACCGGCaacgggtctgtgtgaatggagcaggagcAGGAATGCTGGCAAATGACGCGTCACGTCCTGGCGTTGTCAAAACacagtgcgtcagctaactgacgTAAGCAGTCAGAATAGGGGCGtgttttgaccacaacacaaccaggTTCAGCCACCTTTggacaagaacttgtgaccgtaacgagaAACGGACCAGGTCCAttgaaatggcggaggttgagaATAAAGCAGTCGCAGCACTTCTGAGTGTTACTGATGAACCACAGGTTGGTGACGGATGTGATGTAACtatttgcaaaatataatctctataCAGTGgtttgtttcaagttatttaatcagattttaaggcagtaatgtcaaactttataAAATGAGTTGTTTTCAGCAATCGATCAATCTCAGACTGTGGGTATAGATAGATACACGCACAATGTCTTGATTTTTTGTCATGTATTTAGTTGAtgtaactttgctgcagtgcGTCAAGACCCACCACAACGCCTCTCGTTACGCGACCAGAAACGagagccgagtctcatactggCTTCACTGGTTCAGATCTGTGAGCGCTGGGTCCAGTGACTGtaccgcaaaaacacacaaccacactACTGATGACCTGGTCAGTGACATATCGTTTGCTTTTCCTTCCCGACTATTTGTTATTGGATAGCGAGTCCGAACCGAACCGCTGCCCTGGTCAGAACCAAGagcccagtaaacacagtgtaaggaaactggcaaaatggggaaattatcaaacttttacaaacacgtccagagtACCGGCCCATGTCTCCCGAacccacaggcttctgtagcgtctTGTTTCCATGCCAGCGTTCAGTTGTCTGTGTGAACGACACATGCTGGCAAATTGCAGCATTCGAAGCCAGTGCGAATCACTGTACTGGCCTACCCTCTGACCctgtgcacaacacacacaacacaaaccagACCCTCCGACAGTCACGGGGCTTTTTGTAGAATACAATCTTCACACAGGAGTCCGTGGCACATGTTTGAAGCTCACAGCACCCAGCTGGACTACAGTGTTAGGAGAAGGCGTGTATAATCTGCATGGCTCAATCGATGGATATGGGACAGTTGTTTGGAGTTTACCATTGACCAGAGCGATGTTCAACCCTCGACCCACGTTGTTCTTCACACTGCTGACCAGGCtgaggggacagagagggggcAGGTTAAACTGAGGtgcacacagacccacatgCTGTCcatgacatacacacacacagtcagacccACATGTGGTCCTCCAGGCAGATCTTGGGCCCGATAACATTGGCGGCTCCACTGACGATGCGAAAGGCGAAGTGCTTCTCAGGGCAGGGGGAGGGCAGCCCACACTTGTACCTGCGCGGCCGCGGCTCTGCAGGGGGAGAGATGGGAACAAGAGTCATACGCAATTTACCAATAATATGGTTTTGTATCAATGAAATGCACGTGCACACACAgcccgccacacacacacacacacacccccagtCTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74008 lncRNA downstream 439 45907254 ~ 45908142 (-) True G59191
TU73869 lncRNA downstream 145441 45759711 ~ 45763140 (-) True G59099
TU73855 lncRNA downstream 157608 45750106 ~ 45750973 (-) False AMCG00009769
TU73857 lncRNA downstream 160123 45747557 ~ 45748458 (-) True G59090
TU73841 lncRNA downstream 162327 45745941 ~ 45746254 (-) True G59077
TU74073 lncRNA upstream 145625 46061493 ~ 46112681 (-) True G59236
TU74082 lncRNA upstream 206407 46122275 ~ 46175968 (-) True G59244
AMCG00009779 mRNA downstream 3243 45897094 ~ 45905338 (-) True AMCG00009779
AMCG00009774 mRNA downstream 38846 45865900 ~ 45869735 (-) True AMCG00009774
AMCG00009775 mRNA downstream 96697 45801402 ~ 45811884 (-) True AMCG00009775
AMCG00009777 mRNA downstream 108633 45782243 ~ 45799948 (-) True AMCG00009777
AMCG00009776 mRNA downstream 127368 45774869 ~ 45781213 (-) True AMCG00009776
AMCG00009783 mRNA upstream 117246 46033114 ~ 46052896 (-) True AMCG00009783
AMCG00009788 mRNA upstream 213242 46129110 ~ 46151694 (-) True AMCG00009788
AMCG00009787 mRNA upstream 246403 46162271 ~ 46166818 (-) True AMCG00009787
AMCG00009790 mRNA upstream 253897 46169765 ~ 46172501 (-) True AMCG00009790
AMCG00009789 mRNA upstream 261382 46177250 ~ 46182945 (-) True AMCG00009789
TU73631 other downstream 584631 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other downstream 585259 45320843 ~ 45323322 (-) False AMCG00009748
TU73318 other downstream 1123447 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 1341747 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 1365772 44541894 ~ 44542809 (-) True G58584

Expression Profile